public bool DoJob()
{
SettingsHelper settingHelper = new SettingsHelper();
log.Info("load settings");
settingHelper.LoadSettings(ref pipettingSetting, ref labwareSettings);
heights = ResultReader.Instance.Read();
log.Info("read heights");
//PreparePlasmaDestPositions();
positionGenerator = new PositionGenerator(pipettingSetting, labwareSettings,heights.Count);
string errMsg = "";
bool bok = settingHelper.IsValidSetting(labwareSettings,pipettingSetting,ref errMsg);
if (!bok)
{
throw new Exception("Invalid setting:" + errMsg);
}
int maxSampleAllowed = positionGenerator.AllowedSamples();
if (maxSampleAllowed < heights.Count)
throw new Exception(string.Format("max allowed sample is: {0}",maxSampleAllowed));
string sOutput = Path.GetDirectoryName(Assembly.GetExecutingAssembly().Location) + "\\output\\";
//create folders
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
RunResult runResult = new RunResult();
int sourceRackCount = (int)Math.Ceiling((double)heights.Count / labwareSettings.sourceWells);
WriteRacksCount(sourceRackCount);
string sOrgOutPut = sOutput;
for (int srcRack = 0; srcRack < sourceRackCount; srcRack++)
{
sOutput = sOrgOutPut + "\\srcRack" + (srcRack + 1).ToString() + "\\";
if (!Directory.Exists(sOutput))
Directory.CreateDirectory(sOutput);
int thisRackSamples = srcRack == sourceRackCount - 1 ? (heights.Count - srcRack * labwareSettings.sourceWells) : labwareSettings.sourceWells;
Utility.Write2File(sOutput + "totalSample.txt", thisRackSamples.ToString());
int batchNum = (int)Math.Ceiling((double)thisRackSamples / labwareSettings.tipCount);
Utility.Write2File(sOutput + "batchCount.txt", batchNum.ToString());
for (int startSample = 0; startSample < thisRackSamples; startSample += labwareSettings.tipCount)
{
List<DetectedHeight> heightsThisTime = new List<DetectedHeight>();
for (int tip = 0; tip < labwareSettings.tipCount; tip++)
{
if (tip + startSample >= thisRackSamples)
break;
heightsThisTime.Add(heights[srcRack*labwareSettings.sourceWells+ startSample + tip]);
}
GenerateForBatch(sOutput,srcRack, startSample, heightsThisTime);
AddEachSampleInfo2RunResult(srcRack, startSample,heightsThisTime, runResult);
}
}
AddCommonInfo2RunResult(runResult);
SaveRunResult(runResult);
//runResultSw.Close();
return true;
}
public worklistGenerator()
{
SettingsHelper settingHelper = new SettingsHelper();
settingHelper.LoadSettings(ref pipettingSetting, ref labwareSettings);
}
