public void LoadSettings(ref PipettingSettings pipettingSettings, ref LabwareSettings labwareSettings)
{
XmlSerializer xs = new XmlSerializer(typeof(PipettingSettings));
string sFile = GetExeFolder() + "\\" + stringRes.pipettingSettingFileName;
if (!File.Exists(sFile))
{
SaveSettings(pipettingSettings);
return;
}
Stream stream = new FileStream(sFile, FileMode.Open, FileAccess.Read, FileShare.Read);
pipettingSettings = xs.Deserialize(stream) as PipettingSettings;
stream.Close();
xs = new XmlSerializer(typeof(LabwareSettings));
sFile = GetExeFolder() + "\\" + stringRes.labwareSettingFileName;
if (!File.Exists(sFile))
{
SaveSettings(labwareSettings);
return;
}
stream = new FileStream(sFile, FileMode.Open, FileAccess.Read, FileShare.Read);
labwareSettings = xs.Deserialize(stream) as LabwareSettings;
stream.Close();
}
private void SaveSettings(LabwareSettings labwareSettings)
{
XmlSerializer xs = new XmlSerializer(typeof(LabwareSettings));
string sFile = GetExeFolder() + "\\" + stringRes.labwareSettingFileName;
Stream stream = new FileStream(sFile, FileMode.CreateNew, FileAccess.ReadWrite, FileShare.ReadWrite);
xs.Serialize(stream, labwareSettings);
stream.Close();
}
internal static int GetSamplesPerRow(LabwareSettings labwareSettings, PipettingSettings pipettingSettings)
{
int totalRow = labwareSettings.dstLabwareRows;
int totalSlicePerSample = pipettingSettings.dstbuffySlice + pipettingSettings.dstPlasmaSlice + pipettingSettings.dstRedCellSlice;
if (labwareSettings.dstLabwareColumns == 1)
{
return(1);
}
return(labwareSettings.dstLabwareRows / totalSlicePerSample);
}
public bool IsValidSetting(LabwareSettings labwareSettings, PipettingSettings pipettingSettings, ref string errMsg)
{
if (labwareSettings.sourceLabwareGrids > labwareSettings.dstLabwareStartGrid)
{
errMsg = "plasma start grid must > source sample start grid";
return(false);
}
//if (labwareSettings.dstBuffyStartGrid < labwareSettings.dstLabwareStartGrid)
//{
// errMsg = "buffy start grid must > plasma start grid";
// return false;
//}
//if (labwareSettings.dstRedCellStartGrid < labwareSettings.dstBuffyStartGrid)
//{
// errMsg = "red cell start grid must > buffy start grid";
// return false;
//}
//if (pipettingSettings.dstPlasmaSlice == 0)
//{
// errMsg = "destination plasma slice must > 0";
// return false;
//}
int possibleGrids = labwareSettings.dstLabwareStartGrid - labwareSettings.sourceLabwareStartGrid;
if (labwareSettings.dstLabwareStartGrid < labwareSettings.sourceLabwareStartGrid + labwareSettings.sourceLabwareGrids)
{
errMsg = string.Format("there is only {0} grids between source sample start grid & plasma start grid, but there is {1} racks of source racks!", possibleGrids, labwareSettings.sourceLabwareGrids);
return(false);
}
//如果冻存管载架只有一列位置，那么Region的列数plasma+ buffy数量决定，
//如果冻存管载架有多列位置N，那么Region的列数由N决定
int columnsPerRegion = labwareSettings.dstLabwareColumns;
int totalSlice = pipettingSettings.dstbuffySlice + pipettingSettings.dstPlasmaSlice + pipettingSettings.dstRedCellSlice;
if (columnsPerRegion == 1)
{
columnsPerRegion = totalSlice;
}
if (totalSlice > columnsPerRegion)
{
errMsg = string.Format("there is only {0} columns in the region, but there is {1} slice of plasma,buffy & red cell to dispense!", columnsPerRegion, totalSlice);
return(false);
}
return(true);
}
//const string plasmaName = "Plasma";
//const string redCellName = "RedCell";
public BarcodeTracker(PipettingSettings pipettingSettings, LabwareSettings labwareSettings, List <PatientInfo> patientInfos)
{
this.patientInfos = patientInfos;
this.pipettingSettings = pipettingSettings;
ExcelReader excelReader = new ExcelReader();
correspondingbarcodes = excelReader.ReadBarcodes(labwareSettings,
pipettingSettings,
barcode_plateBarcodes,
barcode_Position);
if (patientInfos.Count > correspondingbarcodes.Count)
{
throw new Exception(string.Format("source barcodes' count:{0} > dest barcodes' count :{1}", patientInfos.Count, correspondingbarcodes.Count));
}
}
public List <List <Tuple <string, string> > > ReadBarcodes(LabwareSettings labwareSettings,
PipettingSettings pipettingSettings,
Dictionary <string, string> barcode_plateBarcode,
Dictionary <string, string> barcode_Position)
{
startIndex = 0;
this.labwareSettings = labwareSettings;
this.pipettingSettings = pipettingSettings;
string sFolder = GlobalVars.Instance.DstBarcodeFolder;
var di = new DirectoryInfo(sFolder);
var files = di.EnumerateFiles("*.csv").ToList();
files = files.OrderBy(x => x.CreationTime).ToList();
List <List <Tuple <string, string> > > correspondingbarcodes = new List <List <Tuple <string, string> > >();
List <string> fileFullNames = files.Select(x => x.FullName).ToList();
string buffyPlateName = "";
bool buffy2Standalone = pipettingSettings.buffyStandalone && pipettingSettings.dstbuffySlice != 0;
if (buffy2Standalone)
{
int cnt = files.Count(x => x.FullName.ToLower().Contains("buffy"));
if (cnt == 0)
{
throw new Exception("No barcode file for buffy plate found!");
}
if (cnt != 1)
{
throw new Exception("Only one buffy plate supported!");
}
buffyPlateName = files.Where(x => x.FullName.ToLower().Contains("buffy")).First().FullName;
fileFullNames = fileFullNames.Except(new List <string>()
{
buffyPlateName
}).ToList();
}
fileFullNames.ForEach(x => ReadBarcode(correspondingbarcodes, barcode_plateBarcode, barcode_Position, x));
if (buffy2Standalone)
{
ReadBarcode(correspondingbarcodes, barcode_plateBarcode, barcode_Position, buffyPlateName);
}
return(correspondingbarcodes);
}
public PositionGenerator(PipettingSettings pSettings, LabwareSettings lSettings, int nSample)
{
pipettingSettings = pSettings;
labwareSettings = lSettings;
totalSample = nSample;
}
public void LoadSettings(ref PipettingSettings pipettingSettings, ref LabwareSettings labwareSettings)
{
XmlSerializer xs = new XmlSerializer(typeof(PipettingSettings));
string sFile = GetExeFolder() + "\\" + stringRes.pipettingSettingFileName;
if (!File.Exists(sFile))
{
SaveSettings(pipettingSettings);
return;
}
Stream stream = new FileStream(sFile, FileMode.Open, FileAccess.Read, FileShare.Read);
pipettingSettings = xs.Deserialize(stream) as PipettingSettings;
stream.Close();
xs = new XmlSerializer(typeof(LabwareSettings));
sFile = GetExeFolder() + "\\" + stringRes.labwareSettingFileName;
if (!File.Exists(sFile))
{
SaveSettings(labwareSettings);
return;
}
stream = new FileStream(sFile, FileMode.Open, FileAccess.Read, FileShare.Read);
labwareSettings = xs.Deserialize(stream) as LabwareSettings;
stream.Close();
}
private void SaveSettings(LabwareSettings labwareSettings)
{
XmlSerializer xs = new XmlSerializer(typeof(LabwareSettings));
string sFile = GetExeFolder() + "\\" + stringRes.labwareSettingFileName;
Stream stream = new FileStream(sFile, FileMode.CreateNew, FileAccess.ReadWrite, FileShare.ReadWrite);
xs.Serialize(stream, labwareSettings);
stream.Close();
}
public bool IsValidSetting(LabwareSettings labwareSettings,PipettingSettings pipettingSettings,ref string errMsg)
{
if (labwareSettings.sourceLabwareGrids > labwareSettings.dstLabwareStartGrid)
{
errMsg = "plasma start grid must > source sample start grid";
return false;
}
//if (labwareSettings.dstBuffyStartGrid < labwareSettings.dstLabwareStartGrid)
//{
// errMsg = "buffy start grid must > plasma start grid";
// return false;
//}
//if (labwareSettings.dstRedCellStartGrid < labwareSettings.dstBuffyStartGrid)
//{
// errMsg = "red cell start grid must > buffy start grid";
// return false;
//}
//if (pipettingSettings.dstPlasmaSlice == 0)
//{
// errMsg = "destination plasma slice must > 0";
// return false;
//}
int possibleGrids = labwareSettings.dstLabwareStartGrid - labwareSettings.sourceLabwareStartGrid ;
if (labwareSettings.dstLabwareStartGrid < labwareSettings.sourceLabwareStartGrid + labwareSettings.sourceLabwareGrids)
{
errMsg = string.Format("there is only {0} grids between source sample start grid & plasma start grid, but there is {1} racks of source racks!", possibleGrids, labwareSettings.sourceLabwareGrids);
return false;
}
//如果冻存管载架只有一列位置，那么Region的列数plasma+ buffy数量决定，
//如果冻存管载架有多列位置N，那么Region的列数由N决定
int columnsPerRegion = labwareSettings.dstLabwareColumns;
int totalSlice = pipettingSettings.dstbuffySlice + pipettingSettings.dstPlasmaSlice + pipettingSettings.dstRedCellSlice;
if (columnsPerRegion == 1)
columnsPerRegion = totalSlice;
if (totalSlice > columnsPerRegion)
{
errMsg = string.Format("there is only {0} columns in the region, but there is {1} slice of plasma,buffy & red cell to dispense!", columnsPerRegion, totalSlice);
return false;
}
return true;
}
public PositionGenerator(PipettingSettings pSettings, LabwareSettings lSettings, int nSample)
{
pipettingSettings = pSettings;
labwareSettings = lSettings;
totalSample = nSample;
}
