internal static WSLProxyResponse BackupDatabase(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.BackupDatabase(loggedOnUser, cfg));
}
return(SeqDBHelper.BackupDatabase());
}
internal static WSLProxyResponse RemoveSample(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.RemoveSample(loggedOnUser, cfg));
}
return(SeqDBHelper.RemoveSample());
}
internal static int DeleteDB(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.DeleteDB(loggedOnUser, cfg));
}
return(SeqDBHelper.DeleteDB());
}
internal static WSLProxyResponse Quast(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Quast(loggedOnUser, cfg));
}
return(SeqDBHelper.Quast());
}
public static WSLProxyResponse SearchSample(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.SearchSample(loggedOnUser, cfg));
}
return(SeqDBHelper.SearchSample());
}
internal static WSLProxyResponse Build_DB(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Build_DB(loggedOnUser, cfg));
}
return(SeqDBHelper.Build_DB(AppConfigHelper.seqdbConfigGlobal.Current()));
}
public static WSLProxyResponse Kraken2(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Kraken2(loggedOnUser, cfg));
}
return(SeqDBHelper.Kraken2());
}
public static WSLProxyResponse Extract(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Extract(loggedOnUser, cfg));
}
return(SeqDBHelper.ExtractSample(AppConfigHelper.ExtractSampleID(), AppConfigHelper.NormalizePathToLinux(AppConfigHelper.ExtractOutputPath())));
}
internal static WSLProxyResponse Centrifuge(string loggedOnUser, string config)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Centrifuge(loggedOnUser, config));
}
return(SeqDBHelper.Centrifuge());
}
internal static WSLProxyResponse Salmonella(string loggedOnUser, string config)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Salmonella(loggedOnUser, config));
}
return(SeqDBHelper.InfluenzaA());
}
public static WSLProxyResponse Assemble(string loggedOnUser, string cfg, string config)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.Assemble(loggedOnUser, cfg, config));
}
return(SeqDBHelper.AssembleSamples(config));
}
public static List <string> SampleIDs(string loggedOnUser, string cfg)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.SampleIDs(loggedOnUser, cfg));
}
return(SeqDBHelper.SampleIDs());
}
public static string GetVersions(string loggedOnUser, string cfg, string dBPath)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.GetVersions(loggedOnUser, cfg, dBPath));
}
return(SeqDBHelper.GetVersions(dBPath));
}
internal static string CentrifugeDatabaseName(string centrifugeDBPath)
{
if (IsServiceClass.IsService)
{
return(BioSeqDBModel.Instance.CentrifugeDatabaseName(centrifugeDBPath));
}
return(SeqDBHelper.CentrifugeDatabaseName(centrifugeDBPath));
}
internal static WSLProxyResponse InfluenzaA(string loggedOnUser, string config)
{
if (IsServiceClass.IsService)
{
if (AppConfigHelper.InfluenzaASamplesPath.StartsWith("[L]"))
{
DirectoryHelper.FileCopy(AppConfigHelper.InfluenzaASamplesPath, "[S]" + AppConfigHelper.UserFolder(), true);
}
return(BioSeqDBModel.Instance.InfluenzaA(loggedOnUser, config));
}
return(SeqDBHelper.InfluenzaA());
}
