/// <summary>
/// Writes delta for query sequences.
/// </summary>
/// <param name="delta">The Deltas.</param>
/// <param name="sorter">Sorter instance.</param>
/// <param name="outputStream">Output file name.</param>
public static void WriteUnsortedDelta(IEnumerable<DeltaAlignment> delta, DeltaAlignmentSorter sorter, Stream outputStream)
{
using (StreamWriter writer = new StreamWriter(outputStream))
{
long deltaPositionInFile = 0;
foreach (DeltaAlignment deltaAlignment in delta)
{
deltaAlignment.Id = deltaPositionInFile;
string deltaString = Helper.GetString(deltaAlignment);
deltaPositionInFile += deltaString.Length;
writer.Write(deltaString);
sorter.Add(deltaAlignment.Id, deltaAlignment.FirstSequenceStart);
}
writer.Flush();
}
}
/// <summary>
/// Writes delta for query sequences.
/// </summary>
/// <param name="delta">The Deltas.</param>
/// <param name="sorter">Sorter instance.</param>
private static void WriteUnsortedDelta(IEnumerable<DeltaAlignment> delta, DeltaAlignmentSorter sorter)
{
using (var writer = new StreamWriter(UnsortedDeltaFile))
{
long deltaPositionInFile = 0;
foreach (DeltaAlignment deltaAlignment in delta)
{
deltaAlignment.Id = deltaPositionInFile;
string deltaString = Helper.GetString(deltaAlignment);
deltaPositionInFile += deltaString.Length;
writer.Write(deltaString);
sorter.Add(deltaAlignment.Id, deltaAlignment.FirstSequenceStart);
}
}
}
/// <summary>
/// Writes delta for query sequences.
/// </summary>
/// <param name="deltaAlignments">Delta alignments to write.</param>
/// <param name="sorter"> </param>
/// <param name="filename">File name to write.</param>
private static void WriteDelta(IEnumerable<DeltaAlignment> deltaAlignments, DeltaAlignmentSorter sorter, string filename)
{
using (StreamWriter writer = new StreamWriter(filename))
{
long deltaPositionInFile = 0;
foreach (DeltaAlignment deltaAlignment in deltaAlignments)
{
deltaAlignment.Id = deltaPositionInFile;
string deltaString = Helper.GetString(deltaAlignment);
deltaPositionInFile += deltaString.Length;
writer.Write(deltaString);
sorter.Add(deltaAlignment.Id, deltaAlignment.FirstSequenceStart);
}
writer.Flush();
}
}