/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other NonCodingRNA instance.</param>
private NonCodingRna(NonCodingRna other)
: base(other) { }
/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other NonCodingRNA instance.</param>
private NonCodingRna(NonCodingRna other)
: base(other)
{
}
/// <summary>
/// Validate GenBank Non Coding RNA features
/// </summary>
/// <param name="nodeName">XML node name</param>
/// <param name="genMetadata">GenBank Metadata</param>
private void ValidateGenBankNonCodingRNA(string nodeName,
GenBankMetadata genMetadata)
{
// Get Values from XML node.
string expectedLocation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Location);
string featureCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.QualifierCount);
string expectedLabel = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.LabelNode);
string expectedNonCodingRnaClass = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.NonCodingRnaClassNode);
List<NonCodingRna> nonCodingRNAFeatureList =
genMetadata.Features.NonCodingRNAs;
var locBuilder = new LocationBuilder();
// Create a copy of Non coding RNA feature.
NonCodingRna cloneNonCodingRNA =
nonCodingRNAFeatureList[0].Clone();
// Validate Non Coding RNA Region qualifiers.
Assert.AreEqual(nonCodingRNAFeatureList.Count.ToString((IFormatProvider) null),
featureCount);
Assert.AreEqual(nonCodingRNAFeatureList[0].NonCodingRnaClass,
expectedNonCodingRnaClass);
Assert.AreEqual(cloneNonCodingRNA.Label,
expectedLabel);
Assert.AreEqual(locBuilder.GetLocationString(
genMetadata.Features.NonCodingRNAs[0].Location),
expectedLocation);
// Create a non Coding RNA and validate the same.
var nRNA =
new NonCodingRna(genMetadata.Features.NonCodingRNAs[0].Location);
var nRNAWithLocation =
new NonCodingRna(expectedLocation);
// Set properties
nRNA.NonCodingRnaClass = expectedNonCodingRnaClass;
nRNAWithLocation.NonCodingRnaClass = expectedNonCodingRnaClass;
// Validate created nRNA.
Assert.AreEqual(nRNA.NonCodingRnaClass,
expectedNonCodingRnaClass);
Assert.AreEqual(nRNAWithLocation.NonCodingRnaClass,
expectedNonCodingRnaClass);
}
