/// <summary>
/// Parsers the files binary content into a abi parser context.
/// </summary>
/// <param name="reader"></param>
/// <returns></returns>
public static IParserContext Parse(BinaryReader reader)
{
var rawData = new Ab1Header(reader);
IVersionedDataParser dataParser = DataParserFactory.GetParser(rawData.MajorVersion);
var context = new ParserContext
{
Header = rawData,
Reader = reader
};
dataParser.ParseData(context);
return(context);
}
/// <summary>
/// Parsers the files binary content into a abi parser context using
/// the specified alphabet.
/// </summary>
/// <param name="reader"></param>
/// <param name="alphabet"></param>
/// <returns></returns>
public static IParserContext Parse(BinaryReader reader, IAlphabet alphabet)
{
// Default to the DNA alphabet
if (alphabet == null)
{
alphabet = Alphabets.DNA;
}
var rawData = new Ab1Header(reader);
IVersionedDataParser dataParser = DataParserFactory.GetParser(rawData.MajorVersion);
var context = new ParserContext {
Header = rawData, Reader = reader, Alphabet = alphabet,
};
dataParser.ParseData(context);
return(context);
}
/// <summary>
/// Parsers the files binary content into a abi parser context using
/// the specified alphabet.
/// </summary>
/// <param name="reader"></param>
/// <param name="alphabet"></param>
/// <returns></returns>
public static IParserContext Parse(BinaryReader reader, IAlphabet alphabet)
{
// Default to the DNA alphabet
if (alphabet == null)
{
alphabet = Alphabets.DNA;
}
var rawData = new Ab1Header(reader);
IVersionedDataParser dataParser = DataParserFactory.GetParser(rawData.MajorVersion);
var context = new ParserContext { Header = rawData, Reader = reader, Alphabet = alphabet, };
dataParser.ParseData(context);
return context;
}