public RegexReduxHelpers(bool bigInput)
{
if (bigInput)
{
InputFile = InputFileHelper.FindInputFile("regexdna-input25000.txt");
ExpectedLength = 136381;
}
else
{
InputFile = InputFileHelper.FindInputFile("regexdna-input25.txt");
ExpectedLength = 152;
}
}
public ReverseComplementHelpers(bool bigInput)
{
if (bigInput)
{
InputFile = InputFileHelper.FindInputFile("revcomp-input25000.txt");
CheckSum = "61-A4-CC-6D-15-8D-26-77-88-93-4F-E2-29-A2-8D-FB";
}
else
{
InputFile = InputFileHelper.FindInputFile("revcomp-input25.txt");
CheckSum = "62-45-8E-09-2E-89-A0-69-8C-17-F5-D8-C7-63-5B-50";
}
FileLength = InputFileHelper.GetFileLength(InputFile);
}
public NucleotideHelpers(bool bigInput)
{
if (bigInput)
{
InputFile = InputFileHelper.FindInputFile("knucleotide-input-big.txt");
expectedCountLetter = new int[] { 302923, 301375, 198136, 197566 };
expectedCountPairs = new int[] { 91779, 91253, 91225, 90837, 60096, 60030, 59889, 59795, 59756, 59713, 59572, 59557, 39203, 39190, 39081, 39023 };
expectedCountFragments = new int[] { 11765, 3572, 380, 7, 7 };
}
else
{
InputFile = InputFileHelper.FindInputFile("knucleotide-input.txt");
expectedCountLetter = new int[] { 1576, 1480, 974, 970 };
expectedCountPairs = new int[] { 496, 480, 470, 420, 316, 315, 310, 302, 298, 292, 273, 272, 202, 201, 185, 167 };
expectedCountFragments = new int[] { 54, 24, 4, 0, 0 };
}
expectedFrequencies = new int[][] { expectedCountLetter, expectedCountPairs };
}