public static AimTemplateTree AimAnnotationToAimTemplateTree(Aim4AnnotationInstance annotationInstance, AimTemplateTree template)
{
if (annotationInstance == null || annotationInstance.AimAnnotationEntity == null)
return null;
var annotation = annotationInstance.AimAnnotationEntity;
if (annotation.ImagingPhysicalEntityCollection != null)
{
foreach (var imgPhysEnt in annotation.ImagingPhysicalEntityCollection)
{
if (IsNullCodeList(imgPhysEnt.TypeCode))
continue;
AimTemplateTreeAnatomicEntityNode matchingTreeNode = FromImagingPhysicalEntity(imgPhysEnt, template);
if (matchingTreeNode == null)
return null;
}
}
if (annotation.ImagingObservationEntityCollection != null)
{
foreach (var io in annotation.ImagingObservationEntityCollection)
{
if (IsNullCodeList(io.TypeCode))
continue;
AimTemplateTreeImagingObservationNode matchingTreeNode = FromImagingObservationEntity(io, template);
if (matchingTreeNode == null)
return null;
}
}
if (annotation.CalculationEntityCollection != null)
{
//foreach (var calc in annotation.CalculationCollection)
//{
// AimTemplateTreeCalculationNode matchingTreeNode =
// template.TemplateNodes.OfType<AimTemplateTreeCalculationNode>().FirstOrDefault(
// treeCalc => treeCalc.Label == calc.Description);
// if (matchingTreeNode != null)
// {
// AimTemplateTreeCalculationType matchingCalculationType =
// matchingTreeNode.CalculationTypes.FirstOrDefault(
// treeCalc => ToStandardCodeSequence(treeCalc).CodeValue == calc.CodeValue);
// if (matchingCalculationType != null)
// {
// matchingTreeNode.SelectedCalculationType = matchingCalculationType;
// }
// else
// return null;
// //if (matchingTreeNode.HasConfidence && calc..HasValue)
// // matchingTreeNode.ConfidenceValue = calc.AnnotatorConfidence.Value;
// }
// else
// return null;
//}
}
if (annotation.InferenceEntityCollection != null)
{
foreach (var inference in annotation.InferenceEntityCollection)
{
if (IsNullCodeList(inference.TypeCode))
continue;
foreach (var inferenceNode in template.TemplateNodes.OfType<AimTemplateTreeInferenceNode>())
{
AimTemplateTreeAllowedTerm matchingAllowedTerm =
inferenceNode.AllowedTerms.FirstOrDefault(term => DoTheyMatch(term, inference.TypeCode));
if (matchingAllowedTerm != null)
matchingAllowedTerm.Selected = true;
}
}
}
template.Markup.Clear();
if (annotation is aim4_dotnet.ImageAnnotation)
{
var imageAnnotation = (aim4_dotnet.ImageAnnotation)annotation;
var annotationName = string.IsNullOrEmpty(imageAnnotation.Name) ? "" : imageAnnotation.Name;
if (imageAnnotation.MarkupEntityCollection != null)
{
foreach (var markupEntity in imageAnnotation.MarkupEntityCollection)
{
if (markupEntity is aim4_dotnet.GeometricShapeEntity)
{
var markup = ToMarkup2D((aim4_dotnet.GeometricShapeEntity)markupEntity, annotationName);
if (markup != null)
template.Markup.Add(markup);
}
else if (markupEntity is aim4_dotnet.TextAnnotationEntity)
{
var textAnnotationEntity = (aim4_dotnet.TextAnnotationEntity) markupEntity;
if (textAnnotationEntity.GeometricShapeEntity != null)
{
var calloutText = AimHelpers.FormatPointCalloutText(annotationName, textAnnotationEntity.Text);
aim4_dotnet.TwoDimensionGeometricShapeEntity geoShapeEntity = null;
if (textAnnotationEntity.GeometricShapeEntity is aim4_dotnet.TwoDimensionGeometricShapeEntity)
{
var twoDGeoShape = (aim4_dotnet.TwoDimensionGeometricShapeEntity) textAnnotationEntity.GeometricShapeEntity;
switch (twoDGeoShape.TwoDimensionSpatialCoordinateCollection.Count)
{
case 1:
{
var markup = new MarkupPoint();
markup.Name = annotationName;
markup.IncludeInAnnotation = twoDGeoShape.IncludeFlag;
markup.Point = AsPointF(twoDGeoShape.TwoDimensionSpatialCoordinateCollection[0]);
markup.CalloutText = calloutText;
markup.CalloutLocation = new PointF(markup.Point.X, markup.Point.Y);
SetMarkupImageReference(markup, twoDGeoShape);
markup.UseCrosshair = AimSettings.Default.UseCrosshairsForTextCallouts;
template.Markup.Add(markup);
}
break;
case 2:
{
var markup = new MarkupPoint();
markup.Name = annotationName;
markup.IncludeInAnnotation = twoDGeoShape.IncludeFlag;
markup.Point = AsPointF(twoDGeoShape.TwoDimensionSpatialCoordinateCollection[0]);
markup.CalloutText = calloutText;
markup.CalloutLocation = AsPointF(twoDGeoShape.TwoDimensionSpatialCoordinateCollection[1]);
SetMarkupImageReference(markup, twoDGeoShape);
markup.UseCrosshair = AimSettings.Default.UseCrosshairsForTextCallouts;
template.Markup.Add(markup);
}
break;
default:
Platform.Log(LogLevel.Error, "TextAnnotation has [{0}] Connector Points", twoDGeoShape.TwoDimensionSpatialCoordinateCollection.Count);
break;
}
}
else if (textAnnotationEntity.GeometricShapeEntity is aim4_dotnet.ThreeDimensionGeometricShapeEntity)
{
// TODO: implement 2D markup conversion!
// TODO: convert to the 2D ImageReferenceUid and referencedFrameNumber!
var threeDGeoShape = (aim4_dotnet.ThreeDimensionGeometricShapeEntity) textAnnotationEntity.GeometricShapeEntity;
switch (threeDGeoShape.ThreeDimensionSpatialCoordinateCollection.Count)
{
case 1:
throw new NotImplementedException();
break;
case 2:
throw new NotImplementedException();
break;
default:
Platform.Log(LogLevel.Error, "TextAnnotation has [{0}] 3D Connector Points", threeDGeoShape.ThreeDimensionSpatialCoordinateCollection.Count);
break;
}
}
}
}
else
Debug.Assert(false, "Unexpected markup type");
}
}
}
return template;
}
public static IMarkup ToMarkup2D(aim4_dotnet.GeometricShapeEntity geometricShape, string markupText)
{
if (geometricShape == null)
return null;
if (geometricShape is aim4_dotnet.TwoDimensionPoint)
{
var point = (aim4_dotnet.TwoDimensionPoint)geometricShape;
var markup = new MarkupPoint();
markup.Name = markupText;
markup.IncludeInAnnotation = point.IncludeFlag;
markup.Point = AsPointF(point.Center);
markup.CalloutText = string.Empty; // markupText;
markup.CalloutLocation = markup.Point - new SizeF(30, 30);
SetMarkupImageReference(markup, point);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionCircle)
{
var circle = (aim4_dotnet.TwoDimensionCircle)geometricShape;
PointF centerPt = AsPointF(circle.Center);
PointF radiusPt = AsPointF(circle.RadiusPoint);
double radiusLength = Vector.Distance(centerPt, radiusPt);
var markup = new MarkupEllipse();
markup.Name = markupText;
markup.IncludeInAnnotation = circle.IncludeFlag;
markup.TopLeft = new PointF((float)(centerPt.X - radiusLength), (float)(centerPt.Y - radiusLength));
markup.BottomRight = new PointF((float)(centerPt.X + radiusLength), (float)(centerPt.Y + radiusLength));
markup.CalloutLocation = markup.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markup, circle);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionEllipse)
{
var ellipse = (aim4_dotnet.TwoDimensionEllipse)geometricShape;
Debug.Assert(ellipse.TwoDimensionSpatialCoordinateCollection.Count == 4, "Ellipse must have four points");
var firstMajorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[0]);
var secondMajorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[1]);
var firstMinorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[2]);
var secondMinorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[3]);
var markup = new MarkupEllipse();
markup.Name = markupText;
markup.IncludeInAnnotation = ellipse.IncludeFlag;
markup.TopLeft = new PointF(firstMajorAxisPt.X, firstMinorAxisPt.Y);
markup.BottomRight = new PointF(secondMajorAxisPt.X, secondMinorAxisPt.Y);
markup.CalloutLocation = markup.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markup, ellipse);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionPolyline)
{
var polyline = (aim4_dotnet.TwoDimensionPolyline)geometricShape;
// Check if this is a non-rotated rectangle
if (polyline.TwoDimensionSpatialCoordinateCollection.Count == 4)
{
PointF twoDPoint1 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[0]);
PointF twoDPoint2 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[1]);
PointF twoDPoint3 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[2]);
PointF twoDPoint4 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[3]);
// If it's a rectangle with sides parallel to the axes
if ((twoDPoint1.X == twoDPoint2.X && twoDPoint2.Y == twoDPoint3.Y && twoDPoint3.X == twoDPoint4.X && twoDPoint4.Y == twoDPoint1.Y) ||
(twoDPoint1.Y == twoDPoint2.Y && twoDPoint2.X == twoDPoint3.X && twoDPoint3.Y == twoDPoint4.Y && twoDPoint4.X == twoDPoint1.X))
{
var markupRectangle = new MarkupRectangle();
markupRectangle.TopLeft = twoDPoint1;
markupRectangle.BottomRight = twoDPoint3;
markupRectangle.Name = markupText;
markupRectangle.IncludeInAnnotation = polyline.IncludeFlag;
markupRectangle.CalloutLocation = markupRectangle.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markupRectangle, polyline);
return markupRectangle;
}
}
var points = new List<PointF>();
foreach (var spatialCoordinate in polyline.TwoDimensionSpatialCoordinateCollection)
if (spatialCoordinate != null)
points.Add(AsPointF(spatialCoordinate));
var markup = new MarkupPolygonal();
markup.Vertices = points;
markup.Name = markupText;
markup.IncludeInAnnotation = polyline.IncludeFlag;
markup.CalloutLocation = markup.Vertices[0] - new SizeF(30, 30);
SetMarkupImageReference(markup, polyline);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionMultiPoint)
{
var multiPoint = (aim4_dotnet.TwoDimensionMultiPoint)geometricShape;
IMarkup markup;
switch (multiPoint.TwoDimensionSpatialCoordinateCollection.Count)
{
case 2:
{
// Line
var markupLinear = new MarkupLinear();
markupLinear.Vertices = new List<PointF>(2);
markupLinear.Vertices.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[0]));
markupLinear.Vertices.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[1]));
markupLinear.CalloutLocation = markupLinear.Vertices[0] - new SizeF(30, 30);
markup = markupLinear;
}
break;
case 3:
{
// Protractor
var markupProtractor = new MarkupProtractor();
markupProtractor.Points = new List<PointF>(3);
markupProtractor.Points.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[0]));
markupProtractor.Points.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[1]));
markupProtractor.Points.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[2]));
markupProtractor.CalloutLocation = markupProtractor.Points[0] - new SizeF(30, 30);
markup = markupProtractor;
}
break;
default:
throw new NotImplementedException("Reading non-linear or non-triangular MultiPoint shape is not implemented");
}
markup.Name = markupText;
markup.IncludeInAnnotation = multiPoint.IncludeFlag;
SetMarkupImageReference(markup, multiPoint);
return markup;
}
// TODO - 3D GeoShapes Conversions
throw new NotImplementedException();
return null;
}