/// <summary>
/// LoadSBML
/// </summary>
/// <param name="filename">the SBML file name.</param>
public void LoadSBML(string filename)
{
WrappedSimulator sim = null;
try
{
CloseProject();
m_env.PluginManager.ChangeStatus(ProjectStatus.Loading);
// Load model
EcellModel model = SBML2EML.Convert(filename);
// Initialize
try
{
sim = new WrappedSimulator(Util.GetDMDirs());
EmlReader.InitializeModel(model, sim);
sim.Initialize();
}
catch (Exception e)
{
if (m_env.PluginManager.DockPanel != null)
Util.ShowWarningDialog(MessageResources.WarnInvalidData + "\n" + e.Message);
Trace.WriteLine(e.ToString());
}
// Create Project
string projectID = model.ModelID;
string comment = "Convert from SBML: " + Path.GetFileName(filename);
ProjectInfo info = new ProjectInfo(projectID, comment, DateTime.Now.ToString(), Constants.defaultSimParam);
info.Type = ProjectType.SBML;
Project project = new Project(info, m_env);
project.LoggerPolicyDic[Constants.defaultSimParam] = new LoggerPolicy();
m_currentProject = project;
project.Simulator = sim;
project.InitializeModel(model, sim);
// Load model
List<EcellObject> passList = new List<EcellObject>();
List<EcellData> ecellDataList = new List<EcellData>();
ecellDataList.Add(new EcellData(Constants.textComment, new EcellValue(comment), null));
passList.Add(EcellObject.CreateObject(projectID, "", Constants.xpathProject, "", ecellDataList));
passList.Add(model);
passList.AddRange(model.Children);
m_env.PluginManager.DataAdd(passList);
m_env.PluginManager.ParameterSet(projectID, Constants.defaultSimParam);
m_env.PluginManager.ChangeStatus(ProjectStatus.Loaded);
}
catch (Exception e)
{
CloseProject();
m_env.Console.WriteLine("Failed to convert SBML: " + filename);
m_env.Console.WriteLine(e.ToString());
throw new EcellException("Failed to convert SBML. " + filename, e);
}
}
/// <summary>
/// Creates the dummy simulator 4 property lists.
/// </summary>
/// <param name="simulator">The dummy simulator</param>
/// <param name="defaultProcess">The dm name of "Process"</param>
/// <param name="defaultStepper">The dm name of "Stepper"</param>
private static void BuildDefaultSimulator(
WrappedSimulator simulator, string defaultProcess, string defaultStepper)
{
try
{
// Set DefaultProcess if null
if (defaultProcess == null)
defaultProcess = Constants.DefaultProcessName;
// Set DefaultStepper if null
if (defaultStepper == null)
defaultStepper = Constants.DefaultStepperName;
//
simulator.CreateStepper(defaultStepper, Constants.textKey);
simulator.CreateEntity(
Constants.xpathVariable,
Constants.xpathVariable + Constants.delimiterColon +
Constants.delimiterPath + Constants.delimiterColon +
Constants.xpathSize.ToUpper()
);
simulator.CreateEntity(
defaultProcess,
Constants.xpathProcess + Constants.delimiterColon +
Constants.delimiterPath + Constants.delimiterColon +
Constants.xpathSize.ToUpper()
);
simulator.LoadEntityProperty(
Constants.xpathSystem + "::/:" + Constants.xpathStepperID,
new string[] { Constants.textKey }
);
simulator.LoadEntityProperty(
Util.BuildFullPN(
Constants.xpathVariable,
Constants.delimiterPath,
Constants.xpathSize.ToUpper(),
Constants.xpathValue
),
new string[] { "0.1" }
);
simulator.Initialize();
}
catch (Exception ex)
{
throw new EcellException(
MessageResources.ErrCombiStepProc, ex);
}
}
public void TestWrappedSimulator()
{
_unitUnderTest.UnloadSimulator();
// When you do not carry out Initialize, Dispose is available.
WrappedSimulator sim1 = new WrappedSimulator(_unitUnderTest.GetDMDirs());
EmlReader.Parse(TestConstant.Model_RBC, sim1);
Console.WriteLine(sim1.GetEntityProperty("System::/:Name"));
sim1.Dispose();
// when I carry out Initialize, Dispose returns error.
WrappedSimulator sim2 = new WrappedSimulator(_unitUnderTest.GetDMDirs());
EmlReader.Parse(TestConstant.Model_RBC, sim2);
Console.WriteLine(sim2.GetEntityProperty("System::/:Name"));
try
{
sim2.Initialize();
sim2.Dispose();
}
catch (Exception e)
{
Trace.WriteLine(e.ToString());
Assert.Fail(e.Message);
}
}