/// <summary> /// Retrieve next result row /// </summary> /// <returns></returns> public override object[] NextRow() { object[] vo; UnpivotedAssayResult rr; if (!PivotInCode) // if not multipivot then call generic broker { vo = base.NextRow(); } else if (MultipivotRowList == null || MultipivotRowList.Count == 0) { vo = null; } else // remove row from multipivot row list { vo = MultipivotRowList[0]; // note: iterating MultipivotRowDict is slow MultipivotRowList.RemoveAt(0); } if (vo != null) { rr = UnpivotedAssayResult.FromValueObjectNew(vo, MdbAssayVoMap); // set cond formatting rr.SetResultValueBackColor(rr.ResultValue, rr.ActivityBin); rr.SetResultValueBackColor(rr.MostPotentVal, rr.ActivityBinMostPotent); SetCoordinates(rr); int voLength = Qt.SelectedCount; //if (vo.Length == voLength) rr.ToValueObject(vo, MdbAssayVoMap); // if same length use existing vo } return(vo); }
/// <summary> /// Summarize unpivoted unsummarized assay data by target /// </summary> /// <param name="parms"></param> /// <param name="qm2"></param> /// <returns></returns> public QueryManager SummarizeByTargetUnpivoted( TargetSummaryOptions summaryOptions, QueryManager qm2) { // This method takes an unpivoted input query, summarizes it according to the summarization parameters // and then formats the summarized data according to the specified output format. // If a targetMap is specified then then coordinates are included in the output, the summarization // level must be target, and the output format must be unpivoted. QueryTable qt, qt2; DataRowMx dr, dr2; DataRowAttributes dra; string cid = "", currentCid; int rti, rfi; AssayDict tad = TargetAssayDict; // be sure target assay dict has been loaded TargetAssaySummarizationLevel sumLevel = TargetAssaySummarizationLevel.Target; // target level SummarizationType sumMethod = summaryOptions.UseMeans ? SummarizationType.BioResponseMean : SummarizationType.MostPotent; OutputDest outputDest = OutputDest.WinForms; TargetMap targetMap = TargetMapDao.GetMapWithCoords(summaryOptions.TargetMapName); qt = Query.GetQueryTableByName(MultiDbAssayDataNames.CombinedNonSumTableName); if (qt == null) { throw new Exception("Query table not found: " + MultiDbAssayDataNames.CombinedNonSumTableName); } UnpivotedAssayResultFieldPositionMap voMap = UnpivotedAssayResultFieldPositionMap.NewOriginalMap(); // used for fast indexing of value by col name voMap.InitializeFromQueryTableVoPositions(qt, 0); if (qm2 == null) // need to create query manager? { qm2 = new QueryManager(); qm2 = InitializeSubqueryQm(MultiDbAssayDataNames.CombinedNonSumTableName); } Query q2 = qm2.Query; qt2 = q2.GetQueryTableByNameWithException(MultiDbAssayDataNames.BaseTableName); UnpivotedAssayResultFieldPositionMap voMap2 = UnpivotedAssayResultFieldPositionMap.NewOriginalMap(); // used for fast indexing of value by col name voMap2.InitializeFromQueryTableVoPositions(qt2, 0); // Summarize rows & store in DataSet qm2.DataTable.Clear(); Dictionary <string, object> includedTargets = null; if (summaryOptions.TargetsWithActivesOnly) { // scan data & make a list of targets to be included includedTargets = new Dictionary <string, object>(); // ... } List <UnpivotedAssayResult> tars = new List <UnpivotedAssayResult>(); // build list of TA rows here currentCid = ""; for (int dri = 0; dri <= DataTableMx.Rows.Count; dri++) { if (dri < DataTableMx.Rows.Count) { dr = DataTableMx.Rows[dri]; cid = dr[KeyValueVoPos] as string; dra = GetRowAttributes(dr); if (dra != null && dra.Filtered) { continue; } if (currentCid == "") { currentCid = cid; } } else { dr = null; } if (dr == null || cid != currentCid) { // summarize rows for current cid & add to new datatable if (tars.Count > 0) // { List <UnpivotedAssayResult> sumTars = TargetAssayUtil.SummarizeData( tars, sumLevel, sumMethod, true, NullValue.NullNumber, NullValue.NullNumber, targetMap); int voLength2 = qm2.DataTable.Columns.Count; foreach (UnpivotedAssayResult sumTar in sumTars) { object[] vo2 = sumTar.ToValueObject(voLength2, voMap2); dr2 = qm2.DataTable.NewRow(); dr2.ItemArrayRef = vo2; // copy ref for efficiency since vo won't be changed qm2.DataTable.Rows.Add(dr2); } } if (dr == null) { break; } tars.Clear(); currentCid = cid; } UnpivotedAssayResult tar = UnpivotedAssayResult.FromValueObjectNew(dr.ItemArray, voMap); tars.Add(tar); // store in form for summarization } qm2.DataTableManager.InitializeRowAttributes(); return(qm2); }