public ConditionSpec(string condName,
ImmutableArray <Type> dataTypes,
UniquenessType uniqueness,
ImmutableArray <SubDispatcherSpec> subDispDefs,
bool extension)
{
this.condName = condName;
DataTypes = dataTypes;
Uniqueness = uniqueness;
this.subDispDefs = subDispDefs;
IsExtension = extension;
}
public static string UniquenessTypeToString(UniquenessType type)
{
switch (type)
{
case UniquenessType.Global:
return("global");
case UniquenessType.None:
return("none");
case UniquenessType.Path:
return("path");
default:
throw new InvalidOperationException($"UniquenessType {type} binding not found, this is a client bug");
}
}
public Uniqueness(UniquenessType uniqueness)
{
_uniquenessUserSelected = uniqueness;
}
public Uniqueness(UniquenessType uniqueness)
{
_uniquenessUserSelected = uniqueness;
}
public void SelectUnique(UniquenessType uniquenessType)
{
SelectPeptidesWithNumberOfMatchesAtOrBelowThreshold(1, uniquenessType);
}
private void SelectPeptidesWithNumberOfMatchesAtOrBelowThreshold(int threshold, UniquenessType uniqueBy)
{
dataGridView1.EndEdit();
var dubious = new HashSet <string>(StringComparer.OrdinalIgnoreCase);
for (int rowIndex = 0; rowIndex < dataGridView1.Rows.Count; rowIndex++)
{
var row = dataGridView1.Rows[rowIndex];
var rowTag = (Tuple <IdentityPath, PeptideDocNode>)row.Tag;
int matchCount = _peptidesInBackgroundProteome.Contains(rowTag.Item1) ? 1 : 0;
for (int col = 0; col < dataGridView1.ColumnCount; col++)
{
if (col == PeptideIncludedColumn.Index || col == PeptideColumn.Index)
{
continue;
}
if (row.Cells[col].Value is bool && ((bool)row.Cells[col].Value))
{
if (uniqueBy == UniquenessType.protein)
{
matchCount++;
}
else
{
var peptide = rowTag.Item2;
var parent = PeptideGroupDocNodes.First(p => p.Children.Contains(peptide));
string testValA;
string testValB;
// ATP5B and atp5b are the same thing, as are "mus musculus" and "MUS MUSCULUS"
if (uniqueBy == UniquenessType.gene)
{
// ReSharper disable once PossibleNullReferenceException
testValA = parent.ProteinMetadata.Gene;
testValB = ((ProteinColumn)dataGridView1.Columns[col].Tag).Protein.Gene;
}
else
{
// ReSharper disable once PossibleNullReferenceException
testValA = parent.ProteinMetadata.Species;
testValB = ((ProteinColumn)dataGridView1.Columns[col].Tag).Protein.Species;
}
// Can't filter on something that isn't there - require nonempty values
if (!string.IsNullOrEmpty(testValA) && !string.IsNullOrEmpty(testValB) &&
string.Compare(testValA, testValB, StringComparison.OrdinalIgnoreCase) != 0)
{
matchCount++;
}
if (string.IsNullOrEmpty(testValA))
{
dubious.Add(parent.Name);
}
if (string.IsNullOrEmpty(testValB))
{
dubious.Add(((ProteinColumn)dataGridView1.Columns[col].Tag).Protein.Name);
}
}
}
if (matchCount > threshold)
{
break;
}
}
row.Cells[PeptideIncludedColumn.Name].Value = (matchCount <= threshold);
}
SetCheckBoxPeptideIncludedHeaderState();
if (dubious.Any())
{
var dubiousValues = TextUtil.LineSeparate(uniqueBy == UniquenessType.gene ?
Resources.UniquePeptidesDlg_SelectPeptidesWithNumberOfMatchesAtOrBelowThreshold_Some_background_proteome_proteins_did_not_have_gene_information__this_selection_may_be_suspect_ :
Resources.UniquePeptidesDlg_SelectPeptidesWithNumberOfMatchesAtOrBelowThreshold_Some_background_proteome_proteins_did_not_have_species_information__this_selection_may_be_suspect_,
Resources.UniquePeptidesDlg_SelectPeptidesWithNumberOfMatchesAtOrBelowThreshold_These_proteins_include_,
TextUtil.LineSeparate(dubious)); // Not L10N
MessageDlg.Show(this, dubiousValues);
}
}
public RestTraversal Uniqueness(UniquenessType uniqueness)
{
return(this.Add(new Uniqueness(uniqueness)));
}
public RestTraversal Uniqueness(UniquenessType uniqueness)
{
return this.Add(new Uniqueness(uniqueness));
}
