public async Task <IHttpActionResult> Import([FromBody] ThreeGBImportRequestArgs args)
{
if (string.IsNullOrWhiteSpace(args.TestName))
{
return(InvalidRequest("Please provide test name."));
}
if (string.IsNullOrWhiteSpace(args.CropID))
{
return(InvalidRequest("Please provide research group ID."));
}
if (string.IsNullOrWhiteSpace(args.FolderID))
{
return(InvalidRequest("Please provide folder ID."));
}
var data = await _threeGBService.ImportDataAsync(Request, args);
var fileInfo = await _fileService.GetFileAsync(args.TestID);
var result = new
{
data.Success,
data.Errors,
data.Warnings,
data.Total,
data.DataResult,
args.TestID,
data.TotalCount,
File = fileInfo
};
return(Ok(result));
}
public async Task ImportDataAsync(ThreeGBImportRequestArgs requestArgs, DataTable dtColumnsTVP, DataTable dtRowTVP, DataTable dtCellTVP)
{
var p1 = DbContext.CreateOutputParameter("@TestID", DbType.Int32);
DbContext.CommandTimeout = 5 * 60; //5 minutes
await DbContext.ExecuteNonQueryAsync(DataConstants.PR_IMPORT_FROM_PHENOME_FOR_3GB,
CommandType.StoredProcedure, args1 =>
{
args1.Add("@CropCode", requestArgs.CropCode);
args1.Add("@BrStationCode", requestArgs.BrStationCode);
args1.Add("@SyncCode", requestArgs.SyncCode);
args1.Add("@CountryCode", requestArgs.CountryCode);
args1.Add("@TestTypeID", requestArgs.TestTypeID);
args1.Add("@TestName", requestArgs.TestName);
args1.Add("@Source", requestArgs.Source);
args1.Add("@ObjectID", requestArgs.ObjectID);
args1.Add("@ThreeGBTaskID", requestArgs.ThreeGBTaskID);
args1.Add("@UserID", _userContext.GetContext().FullName);
args1.Add("@TVPColumns", dtColumnsTVP);
args1.Add("@TVPRow", dtRowTVP);
args1.Add("@TVPCell", dtCellTVP);
args1.Add("@TestID", p1);
args1.Add("@FileID", requestArgs.FileID);
});
requestArgs.TestID = p1.Value.ToInt32();
}
public async Task <PhenoneImportDataResult> GetDataFromPhenomeAsync(HttpRequestMessage request, ThreeGBImportRequestArgs args)
{
var result = new PhenoneImportDataResult();
string cropCode = "";
string breedingStation = "";
string syncCode = "";
string countryCode = "";
#region prepare datatables for stored procedure call
var dtCellTVP = new DataTable();
dtCellTVP.Columns.Add("RowID", typeof(int));
dtCellTVP.Columns.Add("ColumnID", typeof(int));
dtCellTVP.Columns.Add("Value");
var dtRowTVP = new DataTable();
dtRowTVP.Columns.Add("RowNr");
dtRowTVP.Columns.Add("MaterialKey");
dtRowTVP.Columns.Add("GID");
dtRowTVP.Columns.Add("EntryCode");
var dtColumnsTVP = new DataTable("TVP_Column");
dtColumnsTVP.Columns.Add("ColumnNr", typeof(int));
dtColumnsTVP.Columns.Add("TraitID");
dtColumnsTVP.Columns.Add("ColumnLabel");
dtColumnsTVP.Columns.Add("DataType");
#endregion
using (var client = new RestClient(PHENOME_BASE_SVC_URL))
{
client.SetRequestCookies(request);
var response = await client.PostAsync("/api/v1/simplegrid/grid/create/FieldPlants", values =>
{
values.Add("object_type", args.ObjectType);
values.Add("object_id", args.ObjectID);
values.Add("grid_id", args.GridID);
});
await response.EnsureSuccessStatusCodeAsync();
var json1 = await response.Content.DeserializeAsync <PhenomeColumnsResponse>();
//var stringd = await response.Content.ReadAsStringAsync();
if (!json1.Success)
{
throw new UnAuthorizedException(json1.Message);
}
if (!json1.Columns.Any())
{
result.Errors.Add("No columns found.");
return(result);
}
if (!args.ForcedImport && json1.Columns.Count > 50)
{
result.Warnings.Add("You are importing more than 50 columns.This can lead to problem. We recommend to reduce the amount of columns in Phenome. Continue?");
return(result);
}
var response2 = await client.GetAsync("/api/v1/simplegrid/grid/get_json/FieldPlants?" +
$"object_type={args.ObjectType}&" +
$"object_id={args.ObjectID}&" +
$"grid_id={args.GridID}&" +
"add_header=1&" +
//$"rows_per_page=99999&" +
"posStart=0&" +
"count=99999");
await response2.EnsureSuccessStatusCodeAsync();
var json2 = await response2.Content.DeserializeAsync <PhenomeDataResponse>();
//var stringvar = await response2.Content.ReadAsStringAsync();
var totalRecords = json2.Properties.Max(x => x.Total_count);
//if (totalRecords > ConfigurationManager.AppSettings["App:MaxNoOfRecords"].ToInt64())
//{
// result.Errors.Add("Cannot import data having rows greater than " + ConfigurationManager.AppSettings["App:MaxNoOfRecords"]);
// return result;
//}
//if (!json2.Success)
//{
// throw new UnAuthorizedException(json2.Message);
//}
if (totalRecords <= 0)
{
result.Errors.Add("No data to process.");
return(result);
}
var getTraitID = new Func <string, int?>(o =>
{
var traitid = 0;
if (int.TryParse(o, out traitid))
{
if (traitid > 0)
{
return(traitid);
}
}
return(null);
});
var columns1 = json1.Columns.Select(x => new
{
ID = x.id,
ColName = getTraitID(x.variable_id) == null ? x.desc : getTraitID(x.variable_id).ToString(),
DataType = string.IsNullOrWhiteSpace(x.data_type) || x.data_type == "C" ? "NVARCHAR(255)" : x.data_type,
ColLabel = x.desc,
TraitID = getTraitID(x.variable_id)
}).GroupBy(g => g.ColName)
.Select(y =>
{
var elem = y.FirstOrDefault();
var item = new
{
ColumnName = y.Key,
ID = elem.ID,
DataType = elem.DataType,
ColLabel = elem.ColLabel,
TraitID = elem.TraitID
};
return(item);
});
var columns2 = json2.Columns.Select((x, i) => new
{
ID = x.Properties[0].ID,
Index = i
}).GroupBy(g => g.ID).Select(x => new
{
ID = x.Key,
Index = x.FirstOrDefault().Index
});
var columns = (from t1 in columns1
join t2 in columns2 on t1.ID equals t2.ID
select new
{
t2.ID,
t2.Index,
ColName = t1.ColumnName,
t1.DataType,
t1.ColLabel,
t1.TraitID
}).ToList();
//call service to get crop code based on cropid
//https://onprem.unity.phenome-networks.com/api/v1/field/info/
var rgDetail = await client.GetAsync($"/api/v1/researchgroup/info/{ args.CropID}");
await rgDetail.EnsureSuccessStatusCodeAsync();
var researchGroup = await rgDetail.Content.DeserializeAsync <PhenomeFolderInfo>();
if (researchGroup != null)
{
if (researchGroup.Status != "1")
{
throw new UnAuthorizedException(researchGroup.Message);
}
var values = (from t1 in researchGroup.Info.RG_Variables
join t2 in researchGroup.Info.BO_Variables on t1.VID equals t2.VID
select new
{
t1.Name,
t2.Value
}).ToList();
var cropDetail = values.ToDictionary(k => k.Name, v => v.Value, StringComparer.OrdinalIgnoreCase);
if (!cropDetail.TryGetValue("Crop", out cropCode))
{
result.Errors.Add("Crop code not found on " + args.Source + ". Please add crop code first.");
return(result);
}
if (string.IsNullOrWhiteSpace(cropCode))
{
result.Errors.Add("CropCode can not be null or empty.");
return(result);
}
}
//call service to get Breeding station based on breeding station level call on phenome.
var folderDetail = await client.GetAsync($"/api/v1/folder/info/{ args.FolderID}");
await folderDetail.EnsureSuccessStatusCodeAsync();
//validate crop code matches with phenome crop code
//if (!args.CropCode.EqualsIgnoreCase(cropCode) && !args.BrStationCode.EqualsIgnoreCase(result.BrStationCode))
//{
// result.Errors.Add("Crop code and breeding station in phenome and 3GB don't match with each other.");
// return result;
//}
var folderInfo = await folderDetail.Content.DeserializeAsync <PhenomeFolderInfo>();
if (folderInfo != null)
{
if (folderInfo.Status != "1")
{
throw new UnAuthorizedException(researchGroup.Message);
}
var values = (from t1 in folderInfo.Info.RG_Variables
join t2 in folderInfo.Info.BO_Variables on t1.VID equals t2.VID
select new
{
t1.Name,
t2.Value
}).ToList();
var foldervalues = values.ToDictionary(k => k.Name, v => v.Value, StringComparer.OrdinalIgnoreCase);
if (!foldervalues.TryGetValue("Breeding Station", out breedingStation) && !foldervalues.TryGetValue("BreedStat", out breedingStation))
{
result.Errors.Add("Breeding station not found on " + args.Source + ". Please add Breeding station code first.");
return(result);
}
//if (!foldervalues.TryGetValue("Breeding Station", out breedingStation))
//{
// result.Errors.Add("Breeding station not found on " + args.Source + ". Please add Breeding station code first.");
// return result;
//}
if (string.IsNullOrWhiteSpace(breedingStation))
{
result.Errors.Add("Breeding station can not be null or empty.");
return(result);
}
//syncCode
if (!foldervalues.TryGetValue("SyncCode", out syncCode))
{
result.Errors.Add("SyncCode not found on " + args.Source + ". Please add SyncCode first.");
return(result);
}
if (string.IsNullOrWhiteSpace(syncCode))
{
result.Errors.Add("SyncCode can not be null or empty.");
return(result);
}
//get country code if available
foldervalues.TryGetValue("Country", out countryCode);
result.CountryCode = countryCode;
}
//if (!args.CropCode.EqualsIgnoreCase(cropCode) && !args.BrStationCode.EqualsIgnoreCase(breedingStation))
//{
// result.Errors.Add("Crop code and breeding station in phenome and 3GB don't match with each other.");
// return result;
//}
if (!args.CropCode.EqualsIgnoreCase(cropCode))
{
result.Errors.Add("Crop code in phenome and 3GB don't match with each other.");
return(result);
}
if (columns.GroupBy(x => x.ColLabel).Any(g => g.Count() > 1))
{
result.Errors.Add("Duplicate column found on " + args.Source);
return(result);
}
var foundPlantnameColumn = false;
for (int i = 0; i < columns.Count; i++)
{
var col = columns[i];
var dr = dtColumnsTVP.NewRow();
if (col.ColLabel.EqualsIgnoreCase("plant name"))
{
foundPlantnameColumn = true;
}
dr["ColumnNr"] = i;
dr["TraitID"] = col.TraitID;
dr["ColumnLabel"] = col.ColLabel;
dr["DataType"] = col.DataType;
dtColumnsTVP.Rows.Add(dr);
}
if (!foundPlantnameColumn)
{
result.Errors.Add("Plant name column not found on " + args.Source + ". Please add Plant name column on data grid.");
return(result);
}
//validate if gen column exists only for TestType GMAS
if (!columns.Any(o => o.ColLabel.EqualsIgnoreCase("gen")) && args.TestTypeID == 5)
{
result.Errors.Add("Column 'Gen' not found on " + args.Source + ". Please add 'Gen' column on data grid.");
return(result);
}
for (int i = 0; i < json2.Rows.Count; i++)
{
var dr = json2.Rows[i];
var drRow = dtRowTVP.NewRow();
drRow["RowNr"] = i;
drRow["MaterialKey"] = dr.Properties[0].ID;
//foreach (var col in columns)
for (int j = 0; j < columns.Count; j++)
{
var col = columns[j];
var drCell = dtCellTVP.NewRow();
var cellval = dr.Cells[col.Index].Value;
if (col.ColLabel.EqualsIgnoreCase("plant name") && string.IsNullOrWhiteSpace(cellval))
{
result.Errors.Add("Plant name value can not be empty.");
return(result);
}
//check if gen column contains any value. It is mandatory field for GMAS
if (col.ColLabel.EqualsIgnoreCase("gen") && string.IsNullOrWhiteSpace(cellval) && args.TestTypeID == 5)
{
result.Errors.Add("Generation can not be empty.");
return(result);
}
drCell["RowID"] = i;
drCell["ColumnID"] = j;
drCell["Value"] = cellval;
dtCellTVP.Rows.Add(drCell);
}
dtRowTVP.Rows.Add(drRow);
}
//check for duplicate material key
var data = dtRowTVP.AsEnumerable().Select(x => x.Field <string>("MaterialKey"))
.GroupBy(g => g)
.Select(x => new
{
MaterialKey = x.Key,
Count = x.Count()
});
if (data.Any(x => x.MaterialKey.ToText() == string.Empty))
{
result.Errors.Add("Material Key cannot be null or empty");
}
var keys = data.Where(x => x.Count > 1).ToList();
if (keys.Any())
{
var keylist = keys.Select(x => x.MaterialKey).ToList();
var key = keylist.Truncate();
result.Errors.Add($"Duplicate Material key {key}");
}
result.CropCode = cropCode;
result.BrStationCode = breedingStation;
result.SyncCode = syncCode;
result.CountryCode = countryCode;
result.TVPColumns = dtColumnsTVP;
result.TVPRows = dtRowTVP;
result.TVPCells = dtCellTVP;
return(result);
}
}
public async Task <ExcelDataResult> ImportDataAsync(HttpRequestMessage request, ThreeGBImportRequestArgs requestArgs)
{
var result = await GetDataFromPhenomeAsync(request, requestArgs);
if (result.Errors.Any() || result.Warnings.Any())
{
return(new ExcelDataResult
{
Success = false,
Warnings = result.Warnings,
Errors = result.Errors
});
}
requestArgs.SyncCode = result.SyncCode;
requestArgs.CropCode = result.CropCode;
requestArgs.BrStationCode = result.BrStationCode;
requestArgs.CountryCode = result.CountryCode;
//import data into database
await _threeGBRepository.ImportDataAsync(requestArgs, result.TVPColumns, result.TVPRows, result.TVPCells);
return(await _excelDataRepository.GetDataAsync(requestArgs));
}
