private static void FillSegments(TCR.Models.TCRContext context, string[] fields, Receptor receptor)
{
string[] alleles = fields[4].Split(new string[] { ", " }, StringSplitOptions.RemoveEmptyEntries);
foreach (string allele in alleles)
{
VSegment segment = context.VSegments.First(s => s.Alleles == allele);
receptor.VSegments.Add(segment);
}
alleles = fields[6].Split(new string[] { ", " }, StringSplitOptions.RemoveEmptyEntries);
foreach (string allele in alleles)
{
DSegment segment = context.DSegments.First(s => s.Alleles == allele);
receptor.DSegments.Add(segment);
}
alleles = fields[5].Split(new string[] { ", " }, StringSplitOptions.RemoveEmptyEntries);
foreach (string allele in alleles)
{
JSegment segment = context.JSegments.First(s => s.Alleles == allele);
receptor.JSegments.Add(segment);
}
}
private static void FillVSegments(TCR.Models.TCRContext context)
{
FileStream fileStream = new FileStream(ConfigurationManager.AppSettings["InitDataPath"] + "\\trbv.seg", FileMode.Open);
StreamReader reader = new StreamReader(fileStream);
string curStr = null;
reader.ReadLine(); // Пропускаем названия столбцов
List <VSegment> vSegments = new List <VSegment>();
while ((curStr = reader.ReadLine()) != null)
{
string[] fields = curStr.Split(' ');
vSegments.Add(new VSegment
{
Alleles = fields[0],
CDR3_Position = Convert.ToInt32(fields[1]),
FullNucleoSequence = fields[2],
NucleoSequence = fields[3],
NucleoSequenceP = fields[4],
});
}
context.VSegments.AddRange(vSegments);
context.SaveChanges();
}
