public void testBlankInputs()
{
InMemoryDataProvider provider = new InMemoryDataProvider("test", "1.0");
StagingTable table = new StagingTable();
table.setId("table_input1");
StagingColumnDefinition def1 = new StagingColumnDefinition();
def1.setKey("input1");
def1.setName("Input 1");
def1.setType(ColumnType.INPUT);
StagingColumnDefinition def2 = new StagingColumnDefinition();
def2.setKey("result1");
def2.setName("Result1");
def2.setType(ColumnType.DESCRIPTION);
table.setColumnDefinitions(new List <IColumnDefinition>()
{
def1, def2
});
table.setRawRows(new List <List <String> >());
table.getRawRows().Add(new List <String>()
{
"1", "ONE"
});
table.getRawRows().Add(new List <String>()
{
"2", "TWO"
});
provider.addTable(table);
table = new StagingTable();
table.setId("table_input2");
def1 = new StagingColumnDefinition();
def1.setKey("input2");
def1.setName("Input 2");
def1.setType(ColumnType.INPUT);
def2 = new StagingColumnDefinition();
def2.setKey("result2");
def2.setName("Result2");
def2.setType(ColumnType.DESCRIPTION);
table.setColumnDefinitions(new List <IColumnDefinition>()
{
def1, def2
});
table.setRawRows(new List <List <String> >());
table.getRawRows().Add(new List <String>()
{
"", "Blank"
});
table.getRawRows().Add(new List <String>()
{
"A", "Letter A"
});
table.getRawRows().Add(new List <String>()
{
"B", "Letter B"
});
provider.addTable(table);
table = new StagingTable();
table.setId("table_selection");
def1 = new StagingColumnDefinition();
def1.setKey("input1");
def1.setName("Input 1");
def1.setType(ColumnType.INPUT);
table.setColumnDefinitions(new List <IColumnDefinition>()
{
def1
});
table.setRawRows(new List <List <String> >());
table.getRawRows().Add(new List <String>()
{
"*"
});
provider.addTable(table);
table = new StagingTable();
table.setId("primary_site");
def1 = new StagingColumnDefinition();
def1.setKey("site");
def1.setName("Site");
def1.setType(ColumnType.INPUT);
table.setColumnDefinitions(new List <IColumnDefinition>()
{
def1
});
table.setRawRows(new List <List <String> >());
table.getRawRows().Add(new List <String>()
{
"C509"
});
provider.addTable(table);
table = new StagingTable();
table.setId("histology");
def1 = new StagingColumnDefinition();
def1.setKey("hist");
def1.setName("Histology");
def1.setType(ColumnType.INPUT);
table.setColumnDefinitions(new List <IColumnDefinition>()
{
def1
});
table.setRawRows(new List <List <String> >());
table.getRawRows().Add(new List <String>()
{
"8000"
});
provider.addTable(table);
table = new StagingTable();
table.setId("table_year_dx");
def1 = new StagingColumnDefinition();
def1.setKey("year_dx");
def1.setName("Year DX");
def1.setType(ColumnType.INPUT);
table.setColumnDefinitions(new List <IColumnDefinition>()
{
def1
});
table.setRawRows(new List <List <String> >());
table.getRawRows().Add(new List <String>()
{
"1900-2100"
});
provider.addTable(table);
StagingSchema schema = new StagingSchema();
schema.setId("schema_test");
schema.setSchemaSelectionTable("table_selection");
List <StagingSchemaInput> inputs = new List <StagingSchemaInput>();
inputs.Add(new StagingSchemaInput("site", "Primary Site", "primary_site"));
inputs.Add(new StagingSchemaInput("hist", "Hist", "histology"));
inputs.Add(new StagingSchemaInput("year_dx", "Year DX", "table_year_dx"));
inputs.Add(new StagingSchemaInput("input1", "Input 1", "table_input1"));
inputs.Add(new StagingSchemaInput("input2", "Input 2", "table_input2"));
schema.setInputs(inputs);
provider.addSchema(schema);
TNMStagingCSharp.Src.Staging.Staging staging = TNMStagingCSharp.Src.Staging.Staging.getInstance(provider);
Assert.AreEqual("schema_test", staging.getSchema("schema_test").getId());
// check case where required input field not supplied (i.e. no default); since there are is no workflow defined, this should
// not cause an error
StagingData data = new StagingData("C509", "8000");
data.setInput("year_dx", "2018");
data.setInput("input1", "1");
staging.stage(data);
Assert.AreEqual(StagingData.Result.STAGED, data.getResult());
// pass in blank for "input2"
data = new StagingData("C509", "8000");
data.setInput("year_dx", "2018");
data.setInput("input1", "1");
data.setInput("input2", "");
staging.stage(data);
Assert.AreEqual(StagingData.Result.STAGED, data.getResult());
// pass in null for "input2"
data = new StagingData("C509", "8000");
data.setInput("year_dx", "2018");
data.setInput("input1", "1");
data.setInput("input2", null);
staging.stage(data);
Assert.AreEqual(StagingData.Result.STAGED, data.getResult());
}
public void testExternalLoad()
{
Assert.AreEqual("testing", _STAGING.getAlgorithm());
Assert.AreEqual("99.99", _STAGING.getVersion());
Assert.AreEqual(1, _STAGING.getSchemaIds().Count);
Assert.AreEqual(62, _STAGING.getTableIds().Count);
StagingSchema schema = _STAGING.getSchema("urethra");
Assert.IsNotNull(schema);
Assert.AreEqual("testing", schema.getAlgorithm());
Assert.AreEqual("99.99", schema.getVersion());
StagingTable table = _STAGING.getTable("ajcc_descriptor_codes");
Assert.IsNotNull(table);
Assert.AreEqual("testing", table.getAlgorithm());
Assert.AreEqual("99.99", table.getVersion());
Assert.AreEqual(6, table.getTableRows().Count);
HashSet <String> involved = _STAGING.getInvolvedTables("urethra");
Assert.AreEqual(62, involved.Count);
Assert.IsTrue(involved.Contains("mets_eval_ipa"));
StagingData data = new StagingData();
data.setInput("site", "C680");
data.setInput("hist", "8000");
data.setInput("behavior", "3");
data.setInput("grade", "9");
data.setInput("year_dx", "2013");
data.setInput("cs_input_version_original", "020550");
data.setInput("extension", "100");
data.setInput("extension_eval", "9");
data.setInput("nodes", "100");
data.setInput("nodes_eval", "9");
data.setInput("mets", "10");
data.setInput("mets_eval", "9");
// perform the staging
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.STAGED, data.getResult());
Assert.AreEqual("urethra", data.getSchemaId());
Assert.AreEqual(0, data.getErrors().Count);
Assert.AreEqual(37, data.getPath().Count);
// check output
Assert.AreEqual("129", data.getOutput("schema_number"));
Assert.AreEqual("020550", data.getOutput("csver_derived"));
// AJCC 6
Assert.AreEqual("70", data.getOutput("stor_ajcc6_stage"));
// AJCC 7
Assert.AreEqual("700", data.getOutput("stor_ajcc7_stage"));
// Summary Stage
Assert.AreEqual("7", data.getOutput("stor_ss77"));
Assert.AreEqual("7", data.getOutput("stor_ss2000"));
}
