public void test1()
{
Run run = new XCaliburRun(lowmwRawfile);
ResultCollection results = new ResultCollection(run);
run.CurrentScanSet = new ScanSet(1);
Task msgen = new GenericMSGenerator(0, 1000);
msgen.Execute(results);
DeconToolsPeakDetector peakdetector = new DeconToolsPeakDetector();
peakdetector.PeakBackgroundRatio = 0.5;
peakdetector.PeakFitType = DeconTools.Backend.Globals.PeakFitType.QUADRATIC;
peakdetector.SigNoiseThreshold = 3;
peakdetector.IsDataThresholded = true;
peakdetector.Execute(results);
//Task rapidDecon = new RapidDeconvolutor();
//rapidDecon.Execute(results);
Task simpleDecon = new SimpleDecon(0.0005);
simpleDecon.Execute(results);
Console.WriteLine(results.Run.PeakList.Count);
Console.WriteLine(results.ResultList.Count);
string reportedResults = reportResults(results.ResultList);
Console.WriteLine(reportedResults);
}
public void test1()
{
Run run0 = new XCaliburRun(c2_blankfilePath);
Run run1 = new XCaliburRun(c2_6FilePath);
Run run2 = new XCaliburRun(c2_7FilePath);
Run run3 = new XCaliburRun(c2_8FilePath);
Run run4 = new XCaliburRun(c2_9FilePath);
Run run5 = new XCaliburRun(c2_10FilePath);
Project.getInstance().RunCollection.Add(run0);
Project.getInstance().RunCollection.Add(run1);
Project.getInstance().RunCollection.Add(run2);
Project.getInstance().RunCollection.Add(run3);
Project.getInstance().RunCollection.Add(run4);
Project.getInstance().RunCollection.Add(run5);
foreach (Run run in Project.getInstance().RunCollection)
{
ScanSetCollectionCreator scansetCreator = new ScanSetCollectionCreator(run, 1, 1);
scansetCreator.Create();
}
Task msgen = new GenericMSGenerator();
Task peakDetector = new DeconToolsPeakDetector();
Task decon = new SimpleDecon();
Task isosMergerExporter = new BasicIsosMergerExporter("..\\..\\TestFiles\\MergeTestFiles\\BasicIsosMergerExporterTest1Output_isos.csv");
Task scansupdater = new ScanResultUpdater();
Task scansMergerExporter = new BasicScansMergerExporter("..\\..\\TestFiles\\MergeTestFiles\\BasicIsosMergerExporterTest1Output_scans.csv");
Project.getInstance().TaskCollection.TaskList.Add(msgen);
Project.getInstance().TaskCollection.TaskList.Add(peakDetector);
Project.getInstance().TaskCollection.TaskList.Add(decon);
Project.getInstance().TaskCollection.TaskList.Add(isosMergerExporter);
Project.getInstance().TaskCollection.TaskList.Add(scansupdater);
Project.getInstance().TaskCollection.TaskList.Add(scansMergerExporter);
BasicTaskController taskController = new BasicTaskController(Project.getInstance().TaskCollection);
taskController.Execute(Project.getInstance().RunCollection);
TaskCleaner cleaner = new TaskCleaner(Project.getInstance().TaskCollection);
cleaner.CleanTasks();
}
