/// <summary>
/// Initializes a new <see cref="SpriteProperties"/> instance using the supplied <see cref="SequenceProperties"/> instance and sequence index.
/// </summary>
/// <param name="sequence">The Halo 2 sequence instance.</param>
/// <param name="index">The sprite index within the sequence.</param>
/// <exception cref="ArgumentNullException"><paramref name="sequence"/> is null.</exception>
/// <exception cref="ArgumentOutOfRangeException"><paramref name="index"/> it outside of valid range.</exception>
public SpriteProperties(SequenceProperties sequence, int index)
{
//Check
if (sequence == null)
{
throw new ArgumentNullException(nameof(bitmap));
}
if (index < 0 || sequence.bitmap.tag.Sprites[sequence.index].Length <= index)
{
throw new ArgumentOutOfRangeException(nameof(index));
}
this.sequence = sequence;
this.index = index;
}
public static SequenceProperties GetNcbiGenbank(string gid, ref string message)
{
SequenceProperties ncbidat = null;
try
{
ncbidat = WfComponent.Utils.Genbank.GetSequenceProperties(gid, ref message);
if (!string.IsNullOrEmpty(message) ||
ncbidat == null ||
string.IsNullOrEmpty(ncbidat.accession))
{
message += "get genbank sequence data error. ";
return(ncbidat); // genbank error
}
}
catch (Exception e)
{
message += e.Message;
}
return(ncbidat);
}
/// <summary>
/// NCBI Reference nuc
/// </summary>
/// <param name="referenceName">NCBI Reference Accession </param>
/// <param name="nucName">consensus name</param>
/// <param name="nucs">consensus nucreotides</param>
/// <param name="outAlignPath">output agliment file path</param>
public static void OutAglimentNcbi(string referenceName, string nucName, string nucs, string outAlignPath, ref string message)
{
SequenceProperties ncbidat = null;
try {
ncbidat = WfComponent.Utils.Genbank.GetSequenceProperties(referenceName, ref message);
if (!string.IsNullOrEmpty(message) ||
ncbidat == null ||
string.IsNullOrEmpty(ncbidat.accession))
{
message += "get genbank sequence data error. ";
return; // genbank error
}
}
catch (Exception e)
{
message += e.Message;
return;
}
var tmpFasta = outAlignPath.EndsWith(".fasta") ?
Path.ChangeExtension(outAlignPath, ".fna") :
Path.ChangeExtension(outAlignPath, ".fasta");
var fastaLines = new string[]
{
">" + ncbidat.accession,
ncbidat.sequence,
">" + nucName,
nucs
};
// 一時Fasta
WfComponent.Utils.FileUtils.WriteFile(tmpFasta, fastaLines, ref message);
if (!string.IsNullOrEmpty(message))
{
return;
}
var alignProc = new WfComponent.External.Kalign(
new WfComponent.External.KalignOptions()
{
fastaPath = tmpFasta,
outAlign = outAlignPath,
isFastaOut = true
});
// ほぼ一瞬で終わるはずなのでCancel 考えない。
try {
alignProc.StartProcess();
message = alignProc.Message;
if (File.Exists(outAlignPath))
{
message = AliView.AliViewStart(outAlignPath);
}
}
catch (Exception e)
{
message += e.Message;
message += "execute agliment program error, " + alignProc.Message;
}
return;
}
/// <summary>
/// Initializes a new <see cref="HaloBitmap"/> instance using the supplied object index entry.
/// </summary>
/// <param name="entry">The object index entry that contains the bitmap tag group data.</param>
/// <exception cref="ArgumentNullException"><paramref name="entry"/> is null.</exception>
/// <exception cref="ArgumentException"><paramref name="entry"/> is not a bitmap.</exception>
public HaloBitmap(IndexEntry entry)
{
//Check
if (entry == null)
{
throw new ArgumentNullException(nameof(entry));
}
else if (entry.Root != HaloTags.bitm)
{
throw new ArgumentException("Index entry is not bitmap.", nameof(entry));
}
//Setup
this.entry = entry;
tag = new BitmapTag(entry);
maps = new Bitmap[tag.Bitmaps.Length][][];
//Setup Property Accessors
bitmaps = new BitmapProperties[tag.Bitmaps.Length];
for (int i = 0; i < tag.Bitmaps.Length; i++)
{
bitmaps[i] = new BitmapProperties(this, i);
}
sequences = new SequenceProperties[tag.Sequences.Length];
for (int i = 0; i < tag.Sequences.Length; i++)
{
sequences[i] = new SequenceProperties(this, i);
}
//Check
if (tag == null)
{
return;
}
else if (tag.Bitmaps.Length == 0)
{
return;
}
//Loop through bitmaps
for (int k = 0; k < tag.Bitmaps.Length; k++)
{
//Setup
BitmapTagGroup.Bitmap bitmap = tag.Bitmaps[k];
maps[k] = new Bitmap[6][];
//Loop through LODs
byte[] sourceData = null;
for (int l = 0; l < 6; l++)
{
//Get source data
if (bitmap.rawOffsets[l] != uint.MaxValue)
{
RawLocation rawLocation = (RawLocation)(bitmap.rawOffsets[l] & 0xC0000000);
if (rawLocation == RawLocation.Local)
{
sourceData = entry.Raws[RawSection.Bitmap][(int)bitmap.rawOffsets[l]].GetBuffer();
}
else
{
string filelocation = string.Empty;
int rawOffset = (int)(bitmap.rawOffsets[l] & (uint)RawLocation.LocalMask);
switch (rawLocation)
{
case RawLocation.Mainmenu:
filelocation = HaloSettings.MainmenuPath;
break;
case RawLocation.Shared:
filelocation = HaloSettings.SharedPath;
break;
case RawLocation.SinglePlayerShared:
filelocation = HaloSettings.SingleplayerSharedPath;
break;
}
//Check
if (File.Exists(filelocation))
{
using (FileStream fs = new FileStream(filelocation, FileMode.Open))
using (BinaryReader mapReader = new BinaryReader(fs))
{
fs.Seek(rawOffset, SeekOrigin.Begin);
sourceData = mapReader.ReadBytes(bitmap.rawLengths[l]);
}
}
}
}
//Set
if (sourceData.Length == 0)
{
continue;
}
//Prepare
BitmapFlags flags = (BitmapFlags)bitmap.flags;
BitmapFormat format = (BitmapFormat)bitmap.format;
PixelFormat bitmapFormat = PixelFormat.Format32bppArgb;
int sourceBits = 32;
switch (format)
{
case BitmapFormat.A8:
case BitmapFormat.Y8:
case BitmapFormat.P8Bump:
case BitmapFormat.P8:
case BitmapFormat.Ay8: sourceBits = 8; break;
case BitmapFormat.A8y8:
case BitmapFormat.A1r5g5b5:
case BitmapFormat.A4r4g4b4:
case BitmapFormat.V8u8:
case BitmapFormat.G8b8:
case BitmapFormat.R5g6b5: sourceBits = 16; break;
case BitmapFormat.Dxt1: sourceBits = 4; break;
case BitmapFormat.Dxt5:
case BitmapFormat.Dxt3: sourceBits = 8; break;
case BitmapFormat.Argbfp32: sourceBits = 128; break;
}
//Handle
switch (format)
{
case BitmapFormat.R5g6b5: bitmapFormat = PixelFormat.Format16bppRgb565; break;
case BitmapFormat.A1r5g5b5: bitmapFormat = PixelFormat.Format16bppArgb1555; break;
case BitmapFormat.X8r8g8b8: bitmapFormat = PixelFormat.Format32bppRgb; break;
case BitmapFormat.P8Bump: bitmapFormat = PixelFormat.Format8bppIndexed; break;
case BitmapFormat.P8: bitmapFormat = PixelFormat.Format8bppIndexed; break;
}
//Prepare
int width = bitmap.width, height = bitmap.height;
if (flags.HasFlag(BitmapFlags.Linear))
{
width = (int)Math.Ceiling(width / 16f) * 16;
}
//Loop LOD
for (int i = 0; i < l; i++)
{
width /= 2;
height /= 2;
}
//Prepare
int mapWidth = width, mapHeight = height, location = 0;
int mipmapCount = bitmap.mipmapCount;
maps[k][l] = new Bitmap[mipmapCount + 1];
Size bitmapSize = Size.Empty;
byte[] mapData = null;
//Loop
for (int i = 1; i <= mipmapCount + 1; i++)
{
//Prepare
int mapIndex = i - 1;
mapWidth = width; mapHeight = height;
for (int j = 1; j < i; j++)
{
mapWidth /= 2;
mapHeight /= 2;
}
//Get Size
bitmapSize = new Size(mapWidth, mapHeight);
//Check
if (bitmapSize.Width == 0 || bitmapSize.Height == 0)
{
continue;
}
//Create Map
int mapStride = mapWidth * sourceBits / 8;
int mapSize = mapStride * mapHeight;
//Ehh?
switch (format)
{
case BitmapFormat.Dxt1: mapSize = Math.Max(mapSize, 8); break;
case BitmapFormat.Dxt3:
case BitmapFormat.Dxt5: mapSize = Math.Max(mapSize, 16); break;
case BitmapFormat.P8:
case BitmapFormat.P8Bump: mapSize = Math.Max(mapSize, 16); break;
default: mapSize = Math.Max(mapSize, 1); break;
}
mapData = new byte[mapSize];
if (location + mapSize > sourceData.Length)
{
continue;
}
Array.Copy(sourceData, location, mapData, 0, mapSize);
//Deswizzle?
if ((flags & BitmapFlags.Swizzled) == BitmapFlags.Swizzled)
{
mapData = Swizzler.Swizzle(mapData, mapWidth, mapHeight, bitmap.depth, sourceBits, true);
}
if (mapData == null)
{
mapData = new byte[mapSize];
}
using (Bitmap map = new Bitmap(mapWidth, mapHeight, bitmapFormat))
{
unsafe
{
//Lock Bits
BitmapData data = map.LockBits(new Rectangle(0, 0, mapWidth, mapHeight), ImageLockMode.ReadWrite, bitmapFormat);
//Prepare Buffer
byte[] bitmapData = new byte[data.Stride * data.Height];
int dataLength = Math.Min(bitmapData.Length, mapSize);
//Handle Format...
switch (format)
{
case BitmapFormat.A8:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = 255;
bitmapData[x * 4 + 1] = 255;
bitmapData[x * 4 + 2] = 255;
bitmapData[x * 4 + 3] = mapData[x];
}
break;
case BitmapFormat.Y8:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = mapData[x];
bitmapData[x * 4 + 1] = mapData[x];
bitmapData[x * 4 + 2] = mapData[x];
bitmapData[x * 4 + 3] = 255;
}
break;
case BitmapFormat.Ay8:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = mapData[x];
bitmapData[x * 4 + 1] = mapData[x];
bitmapData[x * 4 + 2] = mapData[x];
bitmapData[x * 4 + 3] = mapData[x];
}
break;
case BitmapFormat.A8y8:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = mapData[x * 2];
bitmapData[x * 4 + 1] = mapData[x * 2];
bitmapData[x * 4 + 2] = mapData[x * 2];
bitmapData[x * 4 + 3] = mapData[x * 2 + 1];
}
break;
case BitmapFormat.A4r4g4b4:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = (byte)(mapData[x * 2 + 0] & 0xF0);
bitmapData[x * 4 + 1] = (byte)(mapData[x * 2 + 0] & 0x0F);
bitmapData[x * 4 + 2] = (byte)(mapData[x * 2 + 1] & 0xF0);
bitmapData[x * 4 + 3] = (byte)(mapData[x * 2 + 1] & 0x0F);
}
break;
case BitmapFormat.P8Bump:
case BitmapFormat.P8: Array.Copy(mapData, 0, bitmapData, 0, dataLength); break;
case BitmapFormat.R5g6b5: Array.Copy(mapData, 0, bitmapData, 0, dataLength); break;
case BitmapFormat.A1r5g5b5: Array.Copy(mapData, 0, bitmapData, 0, dataLength); break;
case BitmapFormat.X8r8g8b8: Array.Copy(mapData, 0, bitmapData, 0, dataLength); break;
case BitmapFormat.A8r8g8b8: Array.Copy(mapData, 0, bitmapData, 0, dataLength); break;
case BitmapFormat.Dxt1:
if (mapWidth >= 4 && mapHeight >= 4)
{
S3TC.DecompressDxt1(ref bitmapData, mapData, bitmapSize);
}
break;
case BitmapFormat.Dxt3:
if (mapWidth >= 4 && mapHeight >= 4)
{
S3TC.DecompressDxt3(ref bitmapData, mapData, bitmapSize);
}
break;
case BitmapFormat.Dxt5:
if (mapWidth >= 4 && mapHeight >= 4)
{
S3TC.DecompressDxt5(ref bitmapData, mapData, bitmapSize);
}
break;
case BitmapFormat.Argbfp32:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = (byte)Math.Min((BitConverter.ToSingle(mapData, x * 16 + 8) * 255f), 255f);
bitmapData[x * 4 + 1] = (byte)Math.Min((BitConverter.ToSingle(mapData, x * 16 + 4) * 255f), 255f);
bitmapData[x * 4 + 2] = (byte)Math.Min((BitConverter.ToSingle(mapData, x * 16) * 255f), 255f);
bitmapData[x * 4 + 3] = (byte)Math.Min((BitConverter.ToSingle(mapData, x * 16 + 12) * 255f), 255f);
}
break;
case BitmapFormat.Rgbfp32: break;
case BitmapFormat.Rgbfp16: break;
case BitmapFormat.V8u8:
for (int x = 0; x < mapWidth * mapHeight; x++)
{
bitmapData[x * 4 + 0] = 255;
bitmapData[x * 4 + 1] = (byte)(127 + (sbyte)mapData[x * 2 + 1]);
bitmapData[x * 4 + 2] = (byte)(127 + (sbyte)mapData[x * 2]);
bitmapData[x * 4 + 3] = 255;
}
break;
case BitmapFormat.G8b8: break;
}
//Copy
Marshal.Copy(bitmapData, 0, data.Scan0, bitmapData.Length);
map.UnlockBits(data);
//Setup Palettes
if (format == BitmapFormat.P8Bump)
{
map.SetNormalMapPalette();
}
else if (format == BitmapFormat.P8)
{
map.SetGrayscalePalette();
}
//Set
location += mapSize;
}
//Draw into cropped image
maps[k][l][mapIndex] = new Bitmap(bitmap.width, bitmap.height, bitmapFormat);
using (Graphics g = Graphics.FromImage(maps[k][l][mapIndex])) g.DrawImage(map, Point.Empty);
}
}
}
}
}
