/// <summary>
/// The function actually doing the transforming. This function is called
/// once for each SBase element in the model.
/// </summary>
/// <param name="element">the current element</param>
/// <returns>status code</returns>
public override int transform(SBase element)
{
// return in case we don't have a valid element
if (element == null || element.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER)
{
return(libsbml.LIBSBML_OPERATION_SUCCESS);
}
// or if there is nothing to do
if (!element.isSetName() || element.getId() == element.getName())
{
return(libsbml.LIBSBML_OPERATION_SUCCESS);
}
// find the new id
string newId = getValidIdForName(element.getName());
// set it
element.setId(newId);
// remember it
existingIds.Add(newId);
return(libsbml.LIBSBML_OPERATION_SUCCESS);
}
private static void printAnnotation(SBase sb)
{
string id = "";
if (sb.isSetId())
{
id = sb.getId();
}
printAnnotation(sb, id);
}
private static void printNotes(SBase sb)
{
string id = "";
if (sb.isSetId())
{
id = sb.getId();
}
printNotes(sb, id);
}
/**
* Returns a list of all ids from the given list of elements
*/
public static List <string> getAllIds(SBaseList allElements)
{
var result = new List <string>();
if (allElements == null || allElements.getSize() == 0)
{
return(result);
}
for (uint i = 0; i < allElements.getSize(); ++i)
{
SBase current = allElements.get(i);
if (current.isSetId() && current.getTypeCode() != libsbml.SBML_LOCAL_PARAMETER)
{
result.Add(current.getId());
}
}
return(result);
}
/// <summary>
/// The function performing the filtering, here we just check
/// that we have a valid element, and that it has notes.
/// </summary>
/// <param name="element">the current element</param>
/// <returns><b>true</b> if element is to be included, <b>false</b> otherwise</returns>
public override bool filter(SBase element)
{
// return in case we don't have a valid element
if (element == null || !element.isSetNotes())
{
return(false);
}
// otherwise we have notes set and want to keep the element
if (!element.isSetId())
{
Console.WriteLine(" found : {0}", element.getId());
}
else
{
Console.WriteLine(" found element without id");
}
return(true);
}