Esempio n. 1
0
    /// <summary>
    /// The function actually doing the transforming. This function is called
    /// once for each SBase element in the model.
    /// </summary>
    /// <param name="element">the current element</param>
    /// <returns>status code</returns>
    public override int transform(SBase element)
    {
        // return in case we don't have a valid element
        if (element == null || element.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER)
        {
            return(libsbml.LIBSBML_OPERATION_SUCCESS);
        }

        // or if there is nothing to do
        if (!element.isSetName() || element.getId() == element.getName())
        {
            return(libsbml.LIBSBML_OPERATION_SUCCESS);
        }

        // find the new id
        string newId = getValidIdForName(element.getName());

        // set it
        element.setId(newId);

        // remember it
        existingIds.Add(newId);

        return(libsbml.LIBSBML_OPERATION_SUCCESS);
    }
    private static void printAnnotation(SBase sb)
    {
        string id = "";

        if (sb.isSetId())
        {
            id = sb.getId();
        }
        printAnnotation(sb, id);
    }
Esempio n. 3
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    private static void printNotes(SBase sb)
    {
        string id = "";

        if (sb.isSetId())
        {
            id = sb.getId();
        }
        printNotes(sb, id);
    }
Esempio n. 4
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    /**
     * Returns a list of all ids from the given list of elements
     */
    public static List <string> getAllIds(SBaseList allElements)
    {
        var result = new List <string>();

        if (allElements == null || allElements.getSize() == 0)
        {
            return(result);
        }

        for (uint i = 0; i < allElements.getSize(); ++i)
        {
            SBase current = allElements.get(i);
            if (current.isSetId() && current.getTypeCode() != libsbml.SBML_LOCAL_PARAMETER)
            {
                result.Add(current.getId());
            }
        }

        return(result);
    }
Esempio n. 5
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    /// <summary>
    /// The function performing the filtering, here we just check
    /// that we have a valid element, and that it has notes.
    /// </summary>
    /// <param name="element">the current element</param>
    /// <returns><b>true</b> if element is to be included, <b>false</b> otherwise</returns>
    public override bool filter(SBase element)
    {
        // return in case we don't have a valid element
        if (element == null || !element.isSetNotes())
        {
            return(false);
        }

        // otherwise we have notes set and want to keep the element
        if (!element.isSetId())
        {
            Console.WriteLine("                     found : {0}", element.getId());
        }
        else
        {
            Console.WriteLine("                     found element without id");
        }

        return(true);
    }