public Dictionary <string, bool> CheckForHopfBifurcation(string sbmlInput, List <double> values,
List <string> pNamesVector)
{
var result = new Dictionary <string, bool>();
rr.loadSBML(sbmlInput);
pValues = values;
for (int i = 0; i < pNamesVector.Count; i++)
{
bool isHopfBifurcationFlag = checkHopfBifurcation(pValues, pNamesVector, i);
result[pNamesVector[i]] = isHopfBifurcationFlag;
}
return(result);
}
private void cmdSteadyState_Click(object sender, EventArgs e)
{
thread.QueueItem(() =>
{
if (m_sSBML != null)
{
if (m_sSBML.Length > 0)
{
try
{
if (sim == null)
{
sim = new RoadRunner();
}
sim.loadSBML(m_sSBML);
sim.simulate();
double steadyState = sim.steadyState();
if (
MessageBox.Show(
"Found steady state with sums of squares: " + steadyState +
". Do you want to use this state to be used?", "Steady state calculated",
MessageBoxButtons.YesNo, MessageBoxIcon.Question) != DialogResult.Yes)
{
return;
}
sim.simulate();
ArrayList floatingSpeciesNames = sim.getFloatingSpeciesNames();
double[] speciesConcentrations1 = sim.getFloatingSpeciesConcentrations();
ArrayList boundarySpeciesNames = sim.getBoundarySpeciesNames();
double[] speciesConcentrations2 = sim.getBoundarySpeciesConcentrations();
ArrayList parameterTupleList = sim.getAllGlobalParameterTupleList();
NOM.loadSBML(m_sSBML);
for (int index = 0; index < floatingSpeciesNames.Count; ++index)
{
NOM.setValue((string)floatingSpeciesNames[index], speciesConcentrations1[index]);
}
for (int index = 0; index < boundarySpeciesNames.Count; ++index)
{
NOM.setValue((string)boundarySpeciesNames[index], speciesConcentrations2[index]);
}
foreach (ArrayList arrayList in parameterTupleList)
{
NOM.setValue((string)arrayList[0], (double)arrayList[1]);
}
m_sSBML = NOM.getSBML();
loadSBML(m_sSBML);
return;
}
catch (Exception ex)
{
MessageBox.Show("Could not compute steady state due to: " + ex.Message,
"Steady state could not be computed ...", MessageBoxButtons.OK, MessageBoxIcon.Hand);
return;
}
}
}
MessageBox.Show("There is no model to analyze. Load a model first.", "No Model loaded",
MessageBoxButtons.OK, MessageBoxIcon.Hand);
});
}