/// <summary>
/// Constructor
/// </summary>
/// <param name="inputDirectoryPath">Input directory path</param>
/// <param name="resultToSeqMapFilename">ResultToSeqMap filename</param>
/// <param name="seqToProteinMapFilename"></param>
/// <param name="seqInfoFilename">SeqInfo filename</param>
public PHRPSeqMapReader(string inputDirectoryPath, string resultToSeqMapFilename, string seqToProteinMapFilename, string seqInfoFilename)
{
InputDirectoryPath = inputDirectoryPath;
if (string.IsNullOrEmpty(InputDirectoryPath))
{
InputDirectoryPath = string.Empty;
}
PeptideHitResultType = ReaderFactory.AutoDetermineResultType(resultToSeqMapFilename);
if (PeptideHitResultType == PeptideHitResultTypes.Unknown)
{
ErrorMessage = "Unable to auto-determine the PeptideHit result type based on filename " + resultToSeqMapFilename;
throw new Exception(ErrorMessage);
}
DatasetName = ReaderFactory.AutoDetermineDatasetName(resultToSeqMapFilename);
if (string.IsNullOrEmpty(DatasetName))
{
ErrorMessage = "Unable to auto-determine the dataset name using filename '" + resultToSeqMapFilename + "'";
throw new Exception(ErrorMessage);
}
ResultToSeqMapFilename = resultToSeqMapFilename;
SeqToProteinMapFilename = seqToProteinMapFilename;
mSeqInfoFilename = seqInfoFilename;
MaxProteinsPerSeqID = 0;
}
public static string AutoDetermineDatasetName(string filePath, PeptideHitResultTypes resultType)
{
return(ReaderFactory.AutoDetermineDatasetName(filePath, resultType));
}