protected override void Context()
{
_simulation = new ModelCoreSimulation();
var root = new Container();
root.Add(new EventGroup());
_simulation.Model = new Model();
_simulation.Model.Root = root;
_simulation.BuildConfiguration = new BuildConfiguration();
var reactionBuildingBlock = new ReactionBuildingBlock();
var reactionAtoB = new ReactionBuilder();
var reactionBtoA = new ReactionBuilder();
var partnerA = new ReactionPartnerBuilder("A", 0);
var partnerB = new ReactionPartnerBuilder("B", 0);
//Making both reactions dependent on each other
reactionAtoB.AddProduct(partnerA);
reactionBtoA.AddProduct(partnerB);
reactionAtoB.AddEduct(partnerB);
reactionBtoA.AddEduct(partnerA);
reactionBuildingBlock.Add(reactionAtoB);
reactionBuildingBlock.Add(reactionBtoA);
_simulation.BuildConfiguration.Reactions = reactionBuildingBlock;
}
protected IReactionBuilder CreateReactionForCompoundAndMetabolite(string[] products, params string[] educts)
{
var reaction = new ReactionBuilder();
educts.Each(educt => reaction.AddEduct(new ReactionPartnerBuilder(educt, 1)));
products.Each(product => reaction.AddProduct(new ReactionPartnerBuilder(product, 1)));
return(reaction);
}
protected ReactionBuilder createReaction()
{
var reaction = new ReactionBuilder();
reaction.AddEduct(new ReactionPartnerBuilder("educt", 1.0));
reaction.AddProduct(new ReactionPartnerBuilder("product", 1.0));
reaction.AddModifier("modifier");
return(reaction);
}
private IEnumerable <IReactionBuilder> getReactions()
{
var r1 = new ReactionBuilder();
r1.AddEduct(new ReactionPartnerBuilder("C", 2.0));
r1.AddProduct(new ReactionPartnerBuilder("D1", 1.0));
r1.Name = "name";
r1.WithKinetic(new ExplicitFormula("k1*C"));
r1.Description = "description";
yield return(r1);
yield return(A.Fake <IReactionBuilder>());
}