private void PlotFit(PoolParameters poolParams, string label, double kbi = 1000000) //default kbi is just a very high number to simulate instantaneous turnover (proxy for the available amino acid pool)
{
double[] timepoints = new double[1000];
for (int i = 0; i < timepoints.Length; i++)
{
timepoints[i] = i / 10.0;
}
//half-life = ln(2)/kbt, make half life 0, kbt = infinity
double[] rfs = NonLinearRegression.PredictRelativeFractionUsingThreeCompartmentModel(poolParams.Kst, poolParams.Kbt, poolParams.Kao, kbi, timepoints);
Dispatcher.Invoke(() =>
{
RatioComparisonPlot.plt.Layout(titleHeight: 20, xLabelHeight: 40, y2LabelWidth: 20);
RatioComparisonPlot.plt.XLabel("Time (Days)", fontSize: 20);
// RatioComparisonPlot.plt.YLabel("Relative Fraction (Lys0/Total)", fontSize: 20);
RatioComparisonPlot.plt.YLabel("Lys0 / LysTotal", fontSize: 20);
RatioComparisonPlot.plt.Axis(0, 100, 0, 1);
RatioComparisonPlot.plt.Ticks(fontSize: 18);
RatioComparisonPlot.plt.PlotScatter(timepoints, rfs, label: label, markerShape: ScottPlot.MarkerShape.none);
if (DisplayLegendCheckBox.IsChecked.Value)
{
RatioComparisonPlot.plt.Legend();
}
RatioComparisonPlot.Render();
});
}
public MainWindow()
{
InitializeComponent();
dataGridPeptideFiles.DataContext = DataFilesObservableCollection;
dataGridDatabaseFiles.DataContext = DatabasesObservableCollection;
DisplayedSamplesDataGrid.DataContext = FilesToDisplayObservableCollection;
HiddenSamplesDataGrid.DataContext = FilesToHideObservableCollection;
DisplayAnalyzedFilesDataGrid.DataContext = DataFilesObservableCollection;
HalfLifeHistogramPlot.Configure(enableScrollWheelZoom: false);
PrecisionPlot.Configure(enableScrollWheelZoom: false);
HalfLifeComparisonPlot.Configure(enableScrollWheelZoom: false);
RatioComparisonPlot.Configure(enableScrollWheelZoom: false);
peptideRadioButton.IsChecked = true;
proteinSpecificRadioButton.IsChecked = DisplayProteinInSpecificTable;
DisplayPeptidesView = CollectionViewSource.GetDefaultView(PeptidesToDisplay);
DisplayPeptidesDataGrid.DataContext = DisplayPeptidesView;
Loaders.LoadElements();
PopulateChoices();
}
