public void RankScore()
{
var methodName = MethodBase.GetCurrentMethod().Name;
Utils.ShowStarting(methodName);
const int ranks = 20;
const string filePath = @"\\protoapps\UserData\Wilkins\DIA\DIA.txt";
if (!File.Exists(filePath))
{
Assert.Ignore(@"Skipping test {0} since file not found: {1}", methodName, filePath);
}
var rankScorer = new RankScore(filePath);
for (var charge = 1; charge < 4; charge++)
{
var ionTypes = rankScorer.GetIonTypes(charge, 0);
foreach (var ionType in ionTypes)
{
for (var r = 0; r <= ranks; r++)
{
Console.WriteLine("Charge: {0}, Ion Type: {1}, Rank: {2}, Score: {3}",
charge, ionType.Name, r, rankScorer.GetScore(ionType, r, charge, 0.0));
}
}
}
}
public void RankScoreParamResources()
{
var methodName = MethodBase.GetCurrentMethod().Name;
Utils.ShowStarting(methodName);
const int ranks = 20;
var rankScorer = new RankScore(ActivationMethod.HCD, Ms2DetectorType.Iontrap, Enzyme.Trypsin,
Protocol.Standard);
for (var charge = 1; charge < 4; charge++)
{
var ionTypes = rankScorer.GetIonTypes(charge, 0);
foreach (var ionType in ionTypes)
{
for (var r = 0; r <= ranks; r++)
{
if (r < 4 || r > ranks - 4)
{
Console.WriteLine(@"Charge: {0}, Ion Type: {1}, Rank: {2}, Score: {3:F4}",
charge, ionType.Name, r, rankScorer.GetScore(ionType, r, charge, 0.0));
}
else if (r == 4)
{
Console.WriteLine(" ...");
}
}
Console.WriteLine();
}
Console.WriteLine();
}
}
