public PrositLibraryBuilder(SrmDocument doc, string name, string outPath, Func <bool> replaceLibrary,
IrtStandard irtStandard, IList <PeptideDocNode> peptides, IList <TransitionGroupDocNode> precursors, int nce)
{
_prositClient = PrositPredictionClient.Current;
_intensityModel = PrositIntensityModel.Instance;
_rtModel = PrositRetentionTimeModel.Instance;
_peptides = peptides;
_precursors = precursors;
_document = doc;
LibrarySpec = new BiblioSpecLiteSpec(name, outPath); // Needs to be created before building
_replaceLibrary = replaceLibrary;
IrtStandard = irtStandard;
_nce = nce;
}
