public void NativeVsMz5ChromatogramPerformanceTest(string zipFile, string skyFile, string rawFile,
bool centroided = false,
LockMassParameters lockMassParameters = null)
{
if (!RunPerfTests)
{
return; // PerfTests only run when the global RunPerfTests flag is set
}
_loopcount = LOOPS_AVG;
// Caller may have disabled logging, but we depend on it for data gathering.
using (new LogInfoLevel())
{
Log.AddMemoryAppender();
for (var loop = 0; loop < _loopcount + 1; loop++) // one extra initial loop for warmup
{
// compare mz5 and raw import times
TestFilesZip = GetPerfTestDataURL(zipFile);
var mz5File = Path.ChangeExtension(rawFile, "mz5");
TestFilesPersistent = new[] { rawFile, mz5File }; // list of files that we'd like to unzip alongside parent zipFile, and (re)use in place
_testFilesDir = new TestFilesDir(TestContext, TestFilesZip, null, TestFilesPersistent);
_baseSkyFile = _testFilesDir.GetTestPath(skyFile);
string nativeResults = _testFilesDir.GetTestPath(rawFile);
var rawfiles = new List <string>();
var mz5Results = Path.ChangeExtension(nativeResults, "mz5");
if (centroided)
{
rawfiles.Add(nativeResults); // First time through is centroided
}
rawfiles.Add(mz5Results); // Then mz5
rawfiles.Add(nativeResults); // Then normal
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = (loop == 0) && (_loopcount > 0); // turn on performance measurement after warmup loop
var centroidedThisPass = centroided;
var type = 0;
foreach (var resultspath in rawfiles)
{
_replicateName = loop + "_" + type++;
_skyFile = _baseSkyFile.Replace(".sky", "_" + _replicateName + ".sky");
_dataFile = resultspath;
_centroided = centroidedThisPass;
DoTest();
centroidedThisPass = false;
}
}
DebugLog.Info("Done.");
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // show summary, combining native per test and mz5 per test
var report = stats.Replace(_testFilesDir.PersistentFilesDir.Replace(':', '_'), "");
Console.Write(report); // Want this to appear in nightly log
var log = new Log("Summary");
log.Info(report);
}
}
public void AllVsMz5OptimzeCeImportPerformanceTests()
{
if (!RunPerfTests)
{
return; // PerfTests only run when the global RunPerfTests flag is set
}
_loopCount = 3;
Log.AddMemoryAppender();
AgilentVsMz5OptimzeCeImportPerformanceTest();
ThermoVsMz5OptimzeCeImportPerformanceTest();
AbVsMz5OptimzeCeImportPerformanceTest();
WatersVsMz5OptimzeCeImportPerformanceTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // show summary, combining native per test and mz5 per test
var log = new Log("Summary");
log.Info(stats.Replace(_testFilesDir.PersistentFilesDir, ""));
}
public void WatersLockmassPerfTest()
{
Log.AddMemoryAppender();
TestFilesZip = "https://skyline.gs.washington.edu/perftests/PerfTestLockmass_v2.zip";
TestFilesPersistent = new[] { "ID19638_01_UCA195_2533_082715.raw" }; // List of files that we'd like to unzip alongside parent zipFile, and (re)use in place
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = false; // Turn on performance measurement
RunFunctionalTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // Show summary
var log = new Log("Summary");
if (TestFilesDirs != null)
{
log.Info(stats.Replace(TestFilesDir.PersistentFilesDir, "")); // Remove tempfile info from log
}
}
public void WatersIMSImportTest()
{
Log.AddMemoryAppender();
TestFilesZip = "https://skyline.gs.washington.edu/perftests/PerfImportResultsWatersIMS.zip";
TestFilesPersistent = new[] { "ID12692_01_UCA168_3727_040714.raw", "ID12692_01_UCA168_3727_040714_IA_final_fragment.csv" }; // List of files that we'd like to unzip alongside parent zipFile, and (re)use in place
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = false; // Turn on performance measurement
RunFunctionalTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // Show summary
var log = new Log("Summary");
if (TestFilesDirs != null)
{
log.Info(stats.Replace(TestFilesDir.PersistentFilesDir, "")); // Remove tempfile info from log
}
}
[Timeout(6000000)] // Initial download can take a long time
public void BrukerDiaPasefImportTest()
{
// RunPerfTests = true; // Uncomment this to force test to run in IDE
Log.AddMemoryAppender();
TestFilesZip = "https://skyline.gs.washington.edu/perftests/PerfImportBrukerDiaPasef_v2.zip";
TestFilesPersistent = new[] { ".d" }; // List of file basenames that we'd like to unzip alongside parent zipFile, and (re)use in place
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = false; // Turn on performance measurement
RunFunctionalTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // Show summary
var log = new Log("Summary");
if (TestFilesDirs != null)
{
log.Info(stats.Replace(TestFilesDir.PersistentFilesDir, "")); // Remove tempfile info from log
}
}
public void AgilentIMSImportTest()
{
Log.AddMemoryAppender();
TestFilesZip = "https://skyline.gs.washington.edu/perftests/PerfImportResultsAgilentIMSv5.zip";
TestFilesPersistent = new[] { "19pep_1700V_pos_3May14_Legolas.d", "19pep_1700V_CE22_pos_5May14_Legolas.d" }; // list of files that we'd like to unzip alongside parent zipFile, and (re)use in place
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = false; // turn on performance measurement
RunFunctionalTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // show summary
var log = new Log("Summary");
if (TestFilesDirs != null)
{
log.Info(stats.Replace(TestFilesDir.PersistentFilesDir, "")); // Remove tempfile info from log
}
}
[Timeout(6000000)] // Initial download can take a long time
public void AgilentSpectrumMillIMSImportTest()
{
// RunPerfTests = true; // Uncomment to force this to run in UI
Log.AddMemoryAppender();
TestFilesZip = GetPerfTestDataURL(@"PerfImportAgilentSpectrumMillIMS.zip");
TestFilesPersistent = new[] { "40minG_WBP_wide_z2-3" }; // List of file basenames that we'd like to unzip alongside parent zipFile, and (re)use in place
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = false; // Turn on performance measurement
RunFunctionalTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // Show summary
var log = new Log("Summary");
if (TestFilesDirs != null)
{
log.Info(stats.Replace(TestFilesDir.PersistentFilesDir, "")); // Remove tempfile info from log
}
}
private void AgilentSpectrumMillTest(int testCase)
{
// RunPerfTests = true; // Uncomment this to force test to run in UI
Log.AddMemoryAppender();
_testCase = testCase;
TestFilesZip = _testCase == 1 ? "https://skyline.gs.washington.edu/perftests/PerfImportAgilentSpectrumMillRampedIMS2.zip" :
"https://skyline.gs.washington.edu/perftests/PerfImportAgilentSpectrumMillLibTest.zip";
TestFilesPersistent = new[] { ".d" }; // List of file basenames that we'd like to unzip alongside parent zipFile, and (re)use in place
MsDataFileImpl.PerfUtilFactory.IssueDummyPerfUtils = false; // Turn on performance measurement
RunFunctionalTest();
var logs = Log.GetMemoryAppendedLogEvents();
var stats = PerfUtilFactory.SummarizeLogs(logs, TestFilesPersistent); // Show summary
var log = new Log("Summary");
if (TestFilesDirs != null)
{
log.Info(stats.Replace(TestFilesDir.PersistentFilesDir, "")); // Remove tempfile info from log
}
}
