static void MemoryRelax (ref PerfTests perfTests)
{
perfTests = null;
Console.WriteLine ();
GC.Collect ();
Thread.Sleep (500);
perfTests = new PerfTests ();
Console.WriteLine ();
}
public static void Main ()
{
PerfTests perfTests = new PerfTests ();
perfTests.ObjectModelPerfUsingSmallSizeFlavobacteriabacteriumTestData();
MemoryRelax (ref perfTests);
perfTests.ObjectModelPerfUsingLargeSizeFlavoBacteriabacteriumTestData();
MemoryRelax (ref perfTests);
perfTests.MUMmerPerfTestUsingSmallSizeEcoliData();
MemoryRelax (ref perfTests);
perfTests.MUMmerPerfTestUsingLargeSizeEcoliData();
MemoryRelax (ref perfTests);
perfTests.NUCmerPerfTestUsingSmallSizeEcoliData();
MemoryRelax (ref perfTests);
perfTests.NUCmerPerfTestUsingMediumSizeEcoliData();
MemoryRelax (ref perfTests);
//perfTests.PaDeNAPerfUsingLargeSizeEulerTestData();
//MemoryRelax (ref perfTests);
perfTests.PaDeNAPerfUsingSmallSizeEulerTestData();
MemoryRelax (ref perfTests);
perfTests.PAMSAMPerfTestUsingMediumSizeTestData();
MemoryRelax (ref perfTests);
perfTests.PAMSAMPerfTestUsingLargeSizeTestData();
MemoryRelax (ref perfTests);
perfTests.SmithWatermanPerfTestUsingSmallSizeTestData();
MemoryRelax (ref perfTests);
perfTests.SmithWatermanPerfTestUsingMediumSizeTestData();
MemoryRelax (ref perfTests);
perfTests.NeedlemanWunschPerfTestUsingSmallSizeTestData();
MemoryRelax (ref perfTests);
perfTests.NeedlemanWunschPerfTestUsingMediumSizeTestData();
MemoryRelax (ref perfTests);
perfTests.BAMParserPerfTestUsingLargeSizeTestData();
MemoryRelax (ref perfTests);
perfTests.BAMParserPerfTestUsingVeryLargeSizeTestData();
MemoryRelax (ref perfTests);
perfTests.SAMParserPerfTestUsingLargeSizeTestData();
MemoryRelax (ref perfTests);
perfTests.SAMParserPerfTestUsingVeryLargeSizeTestData();
}
private static unsafe void Main(string[] args)
{
var x = Marshal.AllocHGlobal(128);
var y = Marshal.AllocHGlobal(128);
Spreads.Native.Compression.shuffle((IntPtr)8, (IntPtr)16, (byte *)x, (byte *)y);
Trace.Listeners.Add(new ConsoleListener());
var tests = new PerfTests();
tests.SimpleWriteReadBenchmark();
Console.WriteLine("Finished");
Console.ReadLine();
//try
//{
// //if (Directory.Exists("/localdata/shared_lmdb"))
// //{
// // Directory.Delete("/localdata/shared_lmdb", true);
// //}
// var env = new LMDBEnvironment("/localdata/shared_lmdb", DbEnvironmentFlags.NoSync | DbEnvironmentFlags.WriteMap);
// env.MapSize = 512L * 1024 * 1024 * 1024;
// env.Open();
// // write 1M values and then read them
// var db = env.OpenDatabase("test", new DatabaseConfig(DbFlags.Create | DbFlags.IntegerKey)).Result;
// var count = 1_000_000;
// var lastValue = 0;
// var myupdates = 0;
// env.Write(txn => { db.Truncate(txn); txn.Commit(); });
// Thread.Sleep(5000);
// var sw = new Stopwatch();
// sw.Start();
// while (lastValue < count)
// {
// env.Write(txn =>
// {
// using (var c = db.OpenCursor(txn))
// {
// int key = default(int);
// if (c.TryGet(ref key, ref lastValue, CursorGetOption.Last))
// {
// key++;
// if (key - 1 == lastValue)
// {
// myupdates++;
// }
// lastValue = key;
// }
// c.Put(ref key, ref lastValue, CursorPutOptions.NoOverwrite);
// txn.Commit();
// }
// });
// }
// sw.Stop();
// env.Close().Wait();
// var elapsed = sw.ElapsedMilliseconds;
// File.WriteAllText($"/localdata/stat_{Process.GetCurrentProcess().Id}.txt", $"{myupdates} - {elapsed}");
//}
//catch (Exception ex)
//{
// Console.WriteLine(ex);
//}
}
