/// <summary>
/// General method to Invalidate Quality Sequences
/// <param name="method">enum type to execute different overload</param>
/// </summary>
private static void ValidateQualitySeqLength(ParseOrFormatQualLength method)
{
SAMAlignedSequence align = new SAMAlignedSequence();
try
{
switch (method)
{
case ParseOrFormatQualLength.AlignedSeq:
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
String.Empty);
break;
case ParseOrFormatQualLength.Sequencedata:
align.QName = "Quality Value";
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
String.Empty);
break;
case ParseOrFormatQualLength.Qualitydata:
align.QName = "Quality Value";
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
Constants.QualitySequence);
break;
case ParseOrFormatQualLength.QualityLength:
align.QName = "Quality Value";
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
Constants.QualitySequence);
break;
default:
break;
}
Assert.Fail();
}
catch (ArgumentException)
{
ApplicationLog.WriteLine(
"SAM Parser P2 : Successfully validated the exception");
}
catch (FormatException)
{
ApplicationLog.WriteLine(
"SAM Parser P2 : Successfully validated the exception");
}
}
/// <summary>
/// General method to Invalidate Quality Sequences
/// <param name="method">enum type to execute different overload</param>
/// </summary>
private static void ValidateQualitySeqLength(ParseOrFormatQualLength method)
{
SAMAlignedSequence align = new SAMAlignedSequence();
try
{
switch (method)
{
case ParseOrFormatQualLength.AlignedSeq:
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
String.Empty);
break;
case ParseOrFormatQualLength.Sequencedata:
align.QName = "Quality Value";
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
String.Empty);
break;
case ParseOrFormatQualLength.Qualitydata:
align.QName = "Quality Value";
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
Constants.QualitySequence);
break;
case ParseOrFormatQualLength.QualityLength:
align.QName = "Quality Value";
SAMParser.ParseQualityNSequence(
align,
Alphabets.DNA,
null,
Constants.QualitySequence);
break;
default:
break;
}
Assert.Fail();
}
catch (ArgumentException)
{
ApplicationLog.WriteLine(
"SAM Parser P2 : Successfully validated the exception");
}
catch (FormatException)
{
ApplicationLog.WriteLine(
"SAM Parser P2 : Successfully validated the exception");
}
}
