public void ValidatePairwiseSequenceAlignmentToString()
{
IPairwiseSequenceAlignment align = new PairwiseSequenceAlignment();
var alignedSeq = new PairwiseAlignedSequence();
alignedSeq.FirstSequence = new Sequence(Alphabets.Protein, "AWGHE");
alignedSeq.SecondSequence = new Sequence(Alphabets.Protein, "AW-HE");
alignedSeq.Consensus = new Sequence(Alphabets.Protein, "AWGHE");
alignedSeq.Score = 28;
alignedSeq.FirstOffset = 0;
alignedSeq.SecondOffset = 3;
align.PairwiseAlignedSequences.Add(alignedSeq);
string actualString = align.ToString();
string expectedString = "AWGHE\r\nAWGHE\r\nAW-HE\r\n\r\n".Replace("\r\n", System.Environment.NewLine);
Assert.AreEqual(actualString, expectedString);
}
public void TestPairwiseSequenceAlignmentToString()
{
IPairwiseSequenceAlignment align = new PairwiseSequenceAlignment();
PairwiseAlignedSequence alignedSeq = new PairwiseAlignedSequence();
alignedSeq.FirstSequence = new Sequence(Alphabets.Protein, "AWGHE");
alignedSeq.SecondSequence = new Sequence(Alphabets.Protein, "AW-HE");
alignedSeq.Consensus = new Sequence(Alphabets.Protein, "AWGHE");
alignedSeq.Score = 28;
alignedSeq.FirstOffset = 0;
alignedSeq.SecondOffset = 3;
align.PairwiseAlignedSequences.Add(alignedSeq);
string actualString = align.ToString();
string expectedString = "AWGHE\r\nAWGHE\r\nAW-HE\r\n\r\n";
Assert.AreEqual(actualString, expectedString);
}
