private PairedTTestAnalysisModel GetModel(IDataset dataset)
{
var model = new PairedTTestAnalysisModel(dataset)
{
ANOVASelected = true,
AllPairwiseComparisons = false,
ControlGroup = "2",
Covariance = "Compound Symmetric",
CovariateTransformation = "None",
Covariates = new System.Collections.Generic.List <string>
{
"Cov1"
},
LSMeansSelected = false,
NormalPlotSelected = false,
OtherDesignFactors = new System.Collections.Generic.List <string>
{
"Block1",
"Block2"
},
PRPlotSelected = true,
Response = "Resp 1",
ResponseTransformation = "None",
Significance = "0.05",
Subject = "Animal1",
Treatment = "Day1"
};
return(model);
}
public void GetCommandLineArguments_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = GetModel(GetDataset());
//Act
string result = sut.GetCommandLineArguments();
//Assert
Assert.Equal("Respivs_sp_ivs1~Cov1+Block1+Block2+Timezzz Day1 Animal1 Cov1 \"Compound Symmetric\" None None Block1,Block2 Y Y N N 2 0.05 N", result);
}
public void ScriptFileName_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = new PairedTTestAnalysisModel();
//Act
string result = sut.ScriptFileName;
//Assert
Assert.Equal("PairedTTestAnalysis", result);
}
public void CovariancesList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = new PairedTTestAnalysisModel();
//Act
IEnumerable <string> result = sut.CovariancesList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"Compound Symmetric", "Unstructured", "Autoregressive(1)"
}, result);
}
public void SignificancesList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = new PairedTTestAnalysisModel();
//Act
IEnumerable <string> result = sut.SignificancesList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"0.1", "0.05", "0.01", "0.001"
}, result);
}
public void TransformationsList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = new PairedTTestAnalysisModel();
//Act
IEnumerable <string> result = sut.TransformationsList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"None", "Log10", "Loge", "Square Root", "ArcSine", "Rank"
}, result);
}
public void ExportData_ReturnsCorrectStringArray()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
Mock <IDataset> mockDataset = new Mock <IDataset>();
mockDataset.Setup(x => x.DatasetID).Returns(It.IsAny <int>);
mockDataset.Setup(x => x.DatasetToDataTable()).Returns(GetTestDataTable());
PairedTTestAnalysisModel sut = GetModel(mockDataset.Object);
//Act
string[] result = sut.ExportData();
//Assert
Assert.Equal("Respivs_sp_ivs1,Animal1,Day1,Cov1,Block1,Block2", result[0]);
Assert.Equal(81, result.Count()); //as blank reponses are removed
Assert.StartsWith("9.681530124,8,6,0.56,x", result[32]);
}
public async Task <IActionResult> PairedTTestAnalysis(PairedTTestAnalysisModel model, bool ignoreWarnings)
{
return(await RunAnalysis(model, ignoreWarnings));
}
public void LoadArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = new PairedTTestAnalysisModel(GetDataset());
List <Argument> arguments = new List <Argument>();
arguments.Add(new Argument {
Name = "Response", Value = "Resp1"
});
arguments.Add(new Argument {
Name = "Subject", Value = "Animal1"
});
arguments.Add(new Argument {
Name = "Treatment", Value = "Day1"
});
arguments.Add(new Argument {
Name = "OtherDesignFactors", Value = "Block1,Block2"
});
arguments.Add(new Argument {
Name = "ResponseTransformation", Value = "Log10"
});
arguments.Add(new Argument {
Name = "Covariates", Value = "Cov1"
});
arguments.Add(new Argument {
Name = "CovariateTransformation", Value = "ArcSine"
});
arguments.Add(new Argument {
Name = "ANOVASelected", Value = "False"
});
arguments.Add(new Argument {
Name = "PRPlotSelected", Value = "True"
});
arguments.Add(new Argument {
Name = "NormalPlotSelected", Value = "False"
});
arguments.Add(new Argument {
Name = "Significance", Value = "0.9"
});
arguments.Add(new Argument {
Name = "LSMeansSelected", Value = "True"
});
arguments.Add(new Argument {
Name = "Covariance", Value = "Compound Symmetric"
});
arguments.Add(new Argument {
Name = "ControlGroup", Value = "2"
});
arguments.Add(new Argument {
Name = "AllPairwiseComparisons", Value = "True"
});
Assert.Equal(15, arguments.Count);
//Act
sut.LoadArguments(arguments);
//Assert
Assert.Equal("Resp1", sut.Response);
Assert.Equal("Day1", sut.Treatment);
Assert.Equal("Animal1", sut.Subject);
Assert.Equal(new List <string> {
"Block1", "Block2"
}, sut.OtherDesignFactors);
Assert.Equal("Log10", sut.ResponseTransformation);
Assert.Equal(new List <string> {
"Cov1"
}, sut.Covariates);
Assert.Equal("ArcSine", sut.CovariateTransformation);
Assert.False(sut.ANOVASelected);
Assert.True(sut.PRPlotSelected);
Assert.False(sut.NormalPlotSelected);
Assert.Equal("0.9", sut.Significance);
Assert.True(sut.LSMeansSelected);
Assert.Equal("Compound Symmetric", sut.Covariance);
Assert.Equal("2", sut.ControlGroup);
Assert.True(sut.AllPairwiseComparisons);
}
public void GetArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PairedTTestAnalysisModel sut = GetModel(GetDataset());
//Act
List <Argument> result = sut.GetArguments().ToList();
//Assert
var response = result.Single(x => x.Name == "Response");
Assert.Equal("Resp 1", response.Value);
var treatment = result.Single(x => x.Name == "Treatment");
Assert.Equal("Day1", treatment.Value);
var subject = result.Single(x => x.Name == "Subject");
Assert.Equal("Animal1", subject.Value);
var otherDesignFactors = result.Single(x => x.Name == "OtherDesignFactors");
Assert.Equal("Block1,Block2", otherDesignFactors.Value);
var covariates = result.Single(x => x.Name == "Covariates");
Assert.Equal("Cov1", covariates.Value);
var responseTransformation = result.Single(x => x.Name == "ResponseTransformation");
Assert.Equal("None", responseTransformation.Value);
var covariateTransformation = result.Single(x => x.Name == "CovariateTransformation");
Assert.Equal("None", covariateTransformation.Value);
var anovaSelected = result.Single(x => x.Name == "ANOVASelected");
Assert.Equal("True", anovaSelected.Value);
var prPlotSelected = result.Single(x => x.Name == "PRPlotSelected");
Assert.Equal("True", prPlotSelected.Value);
var allPairwiseComparisonsSelected = result.Single(x => x.Name == "AllPairwiseComparisons");
Assert.Equal("False", allPairwiseComparisonsSelected.Value);
var lsMeansSelected = result.Single(x => x.Name == "LSMeansSelected");
Assert.Equal("False", lsMeansSelected.Value);
var normalPlotSelectedSelected = result.Single(x => x.Name == "NormalPlotSelected");
Assert.Equal("False", normalPlotSelectedSelected.Value);
var significance = result.Single(x => x.Name == "Significance");
Assert.Equal("0.05", significance.Value);
var covariance = result.Single(x => x.Name == "Covariance");
Assert.Equal("Compound Symmetric", covariance.Value);
var controlGroup = result.Single(x => x.Name == "ControlGroup");
Assert.Equal("2", controlGroup.Value);
}
public PairedTTestAnalysisValidator(PairedTTestAnalysisModel ptt)
: base(ptt.DataTable)
{
pttVariables = ptt;
}
