public void LoadArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PValueAdjustmentDatasetBasedInputsModel sut = new PValueAdjustmentDatasetBasedInputsModel();
List <Argument> arguments = new List <Argument>();
arguments.Add(new Argument {
Name = "SelectedTest", Value = "Hochberg"
});
arguments.Add(new Argument {
Name = "Significance", Value = "0.01"
});
arguments.Add(new Argument {
Name = "PValues", Value = "Resp1"
});
arguments.Add(new Argument {
Name = "DatasetLabels", Value = "Treat1"
});
Assert.Equal(4, arguments.Count);
//Act
sut.LoadArguments(arguments);
//Assert
Assert.Equal("Hochberg", sut.SelectedTest);
Assert.Equal("0.01", sut.Significance);
Assert.Equal("Resp1", sut.PValues);
Assert.Equal("Treat1", sut.DatasetLabels);
}
public async Task PVA3()
{
string testName = "PVA3";
//Arrange
HttpClient client = _factory.CreateClient();
PValueAdjustmentDatasetBasedInputsModel model = new PValueAdjustmentDatasetBasedInputsModel();
model.DatasetID = _factory.SheetNames.Single(x => x.Value == "P-value Adjustment Dataset").Key;
model.PValues = "p-value - PVA3";
model.DatasetLabels = "Comparison - PVA2";
model.SelectedTest = "Hochberg";
model.Significance = "0.05";
//Act
StatsOutput statsOutput = await Helpers.SubmitAnalysis(client, "PValueAdjustmentDatasetBasedInputs", new FormUrlEncodedContent(model.ToKeyValue()));
Helpers.SaveTestOutput("PValueAdjustmentDatasetBasedInputs", model, testName, statsOutput);
//Assert
string expectedHtml = File.ReadAllText(Path.Combine("ExpectedResults", "PValueAdjustmentDatasetBasedInputs", testName + ".html"));
Assert.Equal(Helpers.FixForUnixOSs(expectedHtml), Helpers.FixForUnixOSs(statsOutput.HtmlResults));
}
public void GetArguments_ReturnsCorrectArguments()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PValueAdjustmentDatasetBasedInputsModel sut = GetModel();
//Act
List <Argument> result = sut.GetArguments().ToList();
//Assert
var selectedTest = result.Single(x => x.Name == "SelectedTest");
Assert.Equal("Hochberg", selectedTest.Value);
var significance = result.Single(x => x.Name == "Significance");
Assert.Equal("0.01", significance.Value);
var pValues = result.Single(x => x.Name == "PValues");
Assert.Equal("Resp1", pValues.Value);
var datasetValues = result.Single(x => x.Name == "DatasetLabels");
Assert.Equal("Treat1", datasetValues.Value);
}
private PValueAdjustmentDatasetBasedInputsModel GetModel()
{
var model = new PValueAdjustmentDatasetBasedInputsModel
{
SelectedTest = "Hochberg",
Significance = "0.01",
PValues = "Resp1",
DatasetLabels = "Treat1"
};
return(model);
}
public void ScriptFileName_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PValueAdjustmentDatasetBasedInputsModel sut = new PValueAdjustmentDatasetBasedInputsModel();
//Act
string result = sut.ScriptFileName;
//Assert
Assert.Equal("PValueAdjustmentDatasetBasedInputs", result);
}
public void GetCommandLineArguments_ReturnsCorrectString()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PValueAdjustmentDatasetBasedInputsModel sut = GetModel();
//Act
string result = sut.GetCommandLineArguments();
//Assert
Assert.Equal("Resp1 Treat1 Hochberg 0.01", result);
}
public void MultipleComparisonTestsList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PValueAdjustmentDatasetBasedInputsModel sut = new PValueAdjustmentDatasetBasedInputsModel();
//Act
IEnumerable <string> result = sut.MultipleComparisonTests;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"Holm", "Hochberg", "Hommel", "Benjamini-Hochberg", "Bonferroni"
}, result);
}
public void SignificancesList_ReturnsCorrectList()
{
//Arrange
System.Threading.Thread.CurrentThread.CurrentCulture = CultureInfo.InvariantCulture;
PValueAdjustmentDatasetBasedInputsModel sut = new PValueAdjustmentDatasetBasedInputsModel();
//Act
IEnumerable <string> result = sut.SignificancesList;
//Assert
Assert.IsAssignableFrom <IEnumerable <string> >(result);
Assert.Equal(new List <string>()
{
"0.1", "0.05", "0.025", "0.01", "0.001"
}, result);
}
public PValueAdjustmentDatasetBasedInputsValidator(PValueAdjustmentDatasetBasedInputsModel pv)
{
pvVariables = pv;
}
public async Task <IActionResult> PValueAdjustmentDatasetBasedInputs(PValueAdjustmentDatasetBasedInputsModel model, bool ignoreWarnings)
{
return(await RunAnalysis(model, ignoreWarnings));
}
