private void updateFromDto(NumberOfBinsGroupingDefinition groupingDefinition)
{
groupingDefinition.Items.Clear();
groupingDefinition.NumberOfBins = _binSizeGroupingDTO.NumberOfBins;
groupingDefinition.StartColor = _binSizeGroupingDTO.StartColor;
groupingDefinition.EndColor = _binSizeGroupingDTO.EndColor;
groupingDefinition.NamingPattern = _binSizeGroupingDTO.NamingPattern;
groupingDefinition.Strategy = _binSizeGroupingDTO.Strategy;
groupingDefinition.AddItems(_binSizeGroupingDTO.Labels.Select(groupingItemFromLabel));
}
public IReadOnlyList <string> GenerateLabels(IPopulationDataCollector populationDataCollector, PopulationAnalysisNumericField numericField, LabelGenerationOptions options, int numberOfLabels)
{
var groupingDefinition = new NumberOfBinsGroupingDefinition(numericField.Name)
{
NumberOfBins = numberOfLabels,
NamingPattern = options.Pattern,
Strategy = options.Strategy
};
groupingDefinition.CreateLimits(populationDataCollector, numericField);
return(GenerateLabels(populationDataCollector, numericField, groupingDefinition));
}
protected override void Context()
{
base.Context();
_groupingDefinition = new NumberOfBinsGroupingDefinition(_field.Name);
_groupingDefinition.StartColor = Color.Red;
_groupingDefinition.EndColor = Color.PowderBlue;
_groupingDefinition.NamingPattern = "Tralala";
_groupingDefinition.NumberOfBins = 2;
_groupingDefinition.Strategy = LabelGenerationStrategies.Alpha;
_groupingDefinition.AddItem(new GroupingItem {
Label = "Label1"
});
_groupingDefinition.AddItem(new GroupingItem {
Label = "Label2"
});
sut.InitializeWith(_field, _populationDataCollector);
}
public void Edit(IGroupingDefinition groupingDefinition)
{
_groupingDefinition = groupingDefinition.DowncastTo <NumberOfBinsGroupingDefinition>();
_binSizeGroupingDTO.NumberOfBins = _groupingDefinition.NumberOfBins;
_binSizeGroupingDTO.StartColor = _groupingDefinition.StartColor;
_binSizeGroupingDTO.EndColor = _groupingDefinition.EndColor;
_binSizeGroupingDTO.NamingPattern = _groupingDefinition.NamingPattern;
_binSizeGroupingDTO.Strategy = _groupingDefinition.Strategy;
foreach (var groupingItem in _groupingDefinition.Items)
{
var label = new GroupingItemDTO();
label.UpdateFrom(groupingItem);
_binSizeGroupingDTO.Labels.Add(label);
}
_binSizeGroupingDTO.Symbol = _binSizeGroupingDTO.Labels.First().Symbol;
bindToView();
}
public void InitializeWith(IPopulationAnalysisField populationAnalysisField, IPopulationDataCollector populationDataCollector)
{
_numericField = populationAnalysisField as PopulationAnalysisNumericField;
//this should never happen
if (_numericField == null)
{
throw new ArgumentException(PKSimConstants.Error.GroupingCannotBeUsedWithFieldOfType(populationAnalysisField.DataType, GroupingDefinitions.NumberOfBins.DisplayName));
}
if (!_numericField.CanBeUsedForGroupingIn(populationDataCollector))
{
throw new PKSimException(PKSimConstants.Error.GroupingCannotBeCreatedForField(populationAnalysisField.Name));
}
_populationDataCollector = populationDataCollector;
_groupingDefinition = new NumberOfBinsGroupingDefinition(_numericField.Name);
}
protected override Task Context()
{
_dimensionRepository = A.Fake <IDimensionRepository>();
sut = new GroupingDefinitionMapper(_dimensionRepository);
_groupingItem1 = new GroupingItem();
_groupingItem2 = new GroupingItem();
_dimension = DomainHelperForSpecs.TimeDimensionForSpecs();
_unit = _dimension.Unit("h");
A.CallTo(() => _dimensionRepository.DimensionByName(_dimension.Name)).Returns(_dimension);
_valueMappingGrouping = new ValueMappingGroupingDefinition("F1");
_valueMappingGrouping.AddValueLabel("Item1", _groupingItem1);
_valueMappingGrouping.AddValueLabel("Item2", _groupingItem2);
_fixedLimitGrouping = new FixedLimitsGroupingDefinition("F1")
{
DisplayUnit = _unit,
Dimension = _dimension,
};
_fixedLimitGrouping.SetLimits(new[] { 60, 120.0 }.OrderBy(x => x));
_fixedLimitGrouping.AddItem(_groupingItem1);
_fixedLimitGrouping.AddItem(_groupingItem2);
_numberOfBinsGrouping = new NumberOfBinsGroupingDefinition("F1")
{
DisplayUnit = _unit,
Dimension = _dimension,
NumberOfBins = 4,
NamingPattern = "TOTO",
StartColor = Color.Aqua,
EndColor = Color.Red,
Strategy = LabelGenerationStrategies.Numeric
};
_numberOfBinsGrouping.AddItem(_groupingItem1);
_numberOfBinsGrouping.AddItem(_groupingItem2);
return(_completed);
}
protected override void Because()
{
_result = sut.GroupingDefinition as NumberOfBinsGroupingDefinition;
}
private void mapNumberOfBinsGroupingToModel(SnapshotGroupingDefinition snapshot, NumberOfBinsGroupingDefinition groupingDefinition)
{
mapIntervalGroupingToModel(snapshot, groupingDefinition);
groupingDefinition.NumberOfBins = ModelValueFor(snapshot.NumberOfBins);
groupingDefinition.StartColor = ModelValueFor(snapshot.StartColor);
groupingDefinition.EndColor = ModelValueFor(snapshot.EndColor);
groupingDefinition.NamingPattern = snapshot.NamingPattern;
groupingDefinition.Strategy = LabelGenerationStrategies.ById(ModelValueFor(snapshot.Strategy));
}
private void mapNumberOfBinsGroupingToSnapshot(SnapshotGroupingDefinition snapshot, NumberOfBinsGroupingDefinition groupingDefinition)
{
mapIntervalGroupingToSnapshot(snapshot, groupingDefinition);
snapshot.NumberOfBins = groupingDefinition.NumberOfBins;
snapshot.StartColor = groupingDefinition.StartColor;
snapshot.EndColor = groupingDefinition.EndColor;
snapshot.NamingPattern = groupingDefinition.NamingPattern;
snapshot.Strategy = groupingDefinition.Strategy.Id;
}
protected override async Task Because()
{
_newNumberOfBinsGrouping = await sut.MapToModel(_snapshot) as NumberOfBinsGroupingDefinition;
}
public IReadOnlyList <string> GenerateLabels(IPopulationDataCollector populationDataCollector, PopulationAnalysisNumericField numericField, NumberOfBinsGroupingDefinition groupingDefinition)
{
var limitsInDisplayUnit = groupingDefinition.Limits.Select(v => convertedValue(numericField, v)).ToList();
var values = numericField.GetValues(populationDataCollector);
//add min and max to the limits
limitsInDisplayUnit.Insert(0, convertedValue(numericField, values.Min()));
limitsInDisplayUnit.Add(convertedValue(numericField, values.Max()));
return(GenerateLabels(new LabelGenerationOptions
{
Pattern = groupingDefinition.NamingPattern,
Strategy = groupingDefinition.Strategy
}, limitsInDisplayUnit));
}
public override void GlobalContext()
{
base.GlobalContext();
_populationAnalysis = new PopulationPivotAnalysis();
_pkParameterField = new PopulationAnalysisPKParameterField().WithName("PKParam");
_pkParameterField.PKParameter = "AUC";
_pkParameterField.QuantityPath = "A|B|C";
_pkParameterField.QuantityType = QuantityType.Drug;
_pkParameterField.Dimension = _dimensionRepository.MassConcentration;
_parameterField = new PopulationAnalysisParameterField().WithName("Param");
_parameterField.ParameterPath = "A|B|C|D";
_parameterField.Dimension = _dimensionRepository.Auc;
_outputField = new PopulationAnalysisOutputField().WithName("Output");
_outputField.QuantityPath = "A|B|C";
_outputField.Dimension = _dimensionRepository.Auc;
_outputField.Color = Color.Aquamarine;
_genderField = new PopulationAnalysisCovariateField {
Covariate = "Gender"
}.WithName("Gender");
var numberOfBinsGroupingDefinition = new NumberOfBinsGroupingDefinition(_parameterField.Name)
{
NumberOfBins = 2
};
numberOfBinsGroupingDefinition.NamingPattern = "AA";
numberOfBinsGroupingDefinition.StartColor = Color.AliceBlue;
numberOfBinsGroupingDefinition.EndColor = Color.RoyalBlue;
numberOfBinsGroupingDefinition.Strategy = LabelGenerationStrategies.Roman;
numberOfBinsGroupingDefinition.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_numberOfBinsDerivedField = new PopulationAnalysisGroupingField(numberOfBinsGroupingDefinition).WithName("NumberOfBins");
var fixedLimitsGroupingDefinition = new FixedLimitsGroupingDefinition(_pkParameterField.Name);
fixedLimitsGroupingDefinition.AddItems(PopulationAnalysisHelperForSpecs.AgeGroups);
_fixedLimitsGroupingDefinitionField = new PopulationAnalysisGroupingField(fixedLimitsGroupingDefinition)
.WithName("FixedLimits");
fixedLimitsGroupingDefinition.SetLimits(new[] { 1d, 2d }.OrderBy(x => x));
_derivedFieldWithFixedExpression = new PopulationAnalysisExpressionField("A+B")
.WithName("FixedExpression");
var valueMappingGroupingDefinition = new ValueMappingGroupingDefinition(_genderField.Name);
valueMappingGroupingDefinition.AddValueLabel("Male", PopulationAnalysisHelperForSpecs.GroupingItemMale);
valueMappingGroupingDefinition.AddValueLabel("Female", PopulationAnalysisHelperForSpecs.GroupingItemFemale);
var valueMappingGroupingDefinitionField = new PopulationAnalysisGroupingField(valueMappingGroupingDefinition).WithName("ValueMapping");
_populationAnalysis.Add(_pkParameterField);
_populationAnalysis.Add(_parameterField);
_populationAnalysis.Add(_genderField);
_populationAnalysis.Add(_numberOfBinsDerivedField);
_populationAnalysis.Add(_fixedLimitsGroupingDefinitionField);
_populationAnalysis.Add(_derivedFieldWithFixedExpression);
_populationAnalysis.Add(valueMappingGroupingDefinitionField);
_populationAnalysis.Add(_outputField);
}
