public void CleanOutput_AsExpected()
{
var tempDir = RandomPath.GetRandomPath();
Directory.CreateDirectory(tempDir);
File.Create(Path.Combine(tempDir, "json1" + NirvanaHelper.JsonSuffix)).Close();
File.Create(Path.Combine(tempDir, "json2" + NirvanaHelper.JsonSuffix)).Close();
File.Create(Path.Combine(tempDir, "jsonIndex1" + NirvanaHelper.JsonIndexSuffix)).Close();
File.Create(Path.Combine(tempDir, "jsonIndex2" + NirvanaHelper.JsonIndexSuffix)).Close();
var otherFiles = new[] { "other1.31415926", "other2" }.Select(x => Path.Combine(tempDir, x)).ToArray();
Array.Sort(otherFiles);
File.Create(otherFiles[0]).Close();
File.Create(otherFiles[1]).Close();
NirvanaHelper.CleanOutput(tempDir);
var remainFiles = Directory.GetFiles(tempDir).ToArray();
Array.Sort(remainFiles);
Assert.Equal(otherFiles.Length, remainFiles.Length);
for (var i = 0; i < otherFiles.Length; i++)
{
Assert.Equal(otherFiles[i], remainFiles[i]);
}
}
public void GetS3RefLocation_AsExpected()
{
Environment.SetEnvironmentVariable("NirvanaDataUrlBase", "whatever");
Assert.Equal(NirvanaHelper.S3RefPrefix + "GRCh37" + NirvanaHelper.RefSuffix, NirvanaHelper.GetS3RefLocation(GenomeAssembly.GRCh37));
}
