public void MutatorTest1() { Organism organism = new Organism(); organism.Chromosomes.Add(new Chromosome(1, "10")); MutationCounter mutator = new MutationCounter(); mutator.Mutate(organism); mutator.Mutate(organism); mutator.Mutate(organism); mutator.Mutate(organism); Assert.AreEqual(4, mutator.MutationCount); Assert.AreEqual("10", organism.Chromosomes[0].ToString()); }
public void GetMutationCategory() { var v = new VcfVariant(); v.ReferenceAllele = "A"; v.VariantAlleles = new string[] { "C" }; Assert.Equal(MutationCategory.AtoC, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "G"; v.VariantAlleles = new string[] { "T" }; Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "A"; v.VariantAlleles = new string[] { "c" }; Assert.Equal(MutationCategory.AtoC, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "g"; v.VariantAlleles = new string[] { "t" }; Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "G"; v.VariantAlleles = new string[] { "t" }; Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "G"; v.VariantAlleles = new string[] { "TT" }; Assert.Equal(MutationCategory.Insertion, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "GGG"; v.VariantAlleles = new string[] { "T" }; Assert.Equal(MutationCategory.Deletion, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "GG"; v.VariantAlleles = new string[] { "TZ" }; Assert.Equal(MutationCategory.Other, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "G"; v.VariantAlleles = new string[] { "G" }; Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v)); v.ReferenceAllele = "G"; v.VariantAlleles = new string[] { "." }; Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v)); }
public void GetMutationCategory_VariantInput() { var v = MakeDummyAllele("A", "C"); Assert.Equal(MutationCategory.AtoC, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "T"); Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("A", "c"); Assert.Equal(MutationCategory.AtoC, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "t"); Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "t"); Assert.Equal(MutationCategory.GtoT, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "TT"); Assert.Equal(MutationCategory.Insertion, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("GGG", "T"); Assert.Equal(MutationCategory.Deletion, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("GG", "TZ"); Assert.Equal(MutationCategory.Other, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "G"); Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "g"); Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("g", "G"); Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("g", "g"); Assert.Equal(MutationCategory.Reference, MutationCounter.GetMutationCategory(v)); v = MakeDummyAllele("G", "."); Assert.Equal(MutationCategory.Reference, MutationCategoryUtil.GetMutationCategory(v)); }
public void MutatorTest4() { Organism organism = new Organism(); organism.Chromosomes.Add(new Chromosome(1, "10")); int runCount = 100000; double mutationProbability = 0; MutationCounter mutator = new MutationCounter(); IRandom rand = new Rand(); Mutator mutationManager = new Mutator(rand, mutationProbability); mutationManager.AddMutator(mutator); for (int i = 0; i <= runCount - 1; i++) { mutationManager.Mutate(organism); } Assert.AreEqual(0, mutator.MutationCount); Assert.AreEqual("10", organism.Chromosomes[0].ToString()); }