private void LoadMotif()
{
DialogResult dlg = dlgOpenMotif.ShowDialog();
if (dlg != DialogResult.OK)
{
return;
}
SetText(dlgOpenMotif);
string filename = dlgOpenMotif.FileName;
try
{
Motif = Motif.ReadFromFile(filename);
}
catch
{
MessageBox.Show("The file may be corrupted or not a valid PeSA motif file.", Analyzer.ProgramName);
return;
}
Validator = new MotifValidator();
Settings settings = Settings.Load("default.settings");
int heightImage = 200;
int widthImage = 800;
if (settings != null)
{
heightImage = settings.MotifHeight;
widthImage = settings.MotifWidth;
}
mdPositive.Image = Motif.GetPositiveMotif(widthImage, heightImage);
mdNegative.Image = Motif.GetNegativeMotif(widthImage, heightImage);
mdChart.Image = Motif.GetBarChart(pMotif.Width - 6);
eWildtype.Text = Motif.WildTypePeptide;
}
private bool DrawMotifs()
{
try
{
ClearMotifs();
if (PA == null)
{
return(true);
}
Settings settings = Settings.Load("default.settings");
int heightImage = 200;
int widthImage = 800;
if (settings != null)
{
heightImage = settings.MotifHeight;
widthImage = settings.MotifWidth;
}
Motif = new Motif(PA.NormalizedPeptideWeights, PA.NormalizedWildtypeWeights, PA.WildTypePeptide, PA.PositiveThreshold, PA.NegativeThreshold);
mdPositive.Image = Motif.GetPositiveMotif(widthImage, heightImage);
mdNegative.Image = Motif.GetNegativeMotif(widthImage, heightImage);
mdChart.Image = Motif.GetBarChart(pMotif.Width - 6);
return(true);
}
catch { return(false); }
}
private bool DrawMotifs()
{
try
{
ClearMotifs();
if (OA == null)
{
return(true);
}
Settings settings = Settings.Load("default.settings");
int heightImage = 200;
int widthImage = 800;
if (settings != null)
{
heightImage = settings.MotifHeight;
widthImage = settings.MotifWidth;
}
if (!CreateMotif())
{
return(false);
}
mdPositive.Image = Motif.GetPositiveMotif(widthImage, heightImage);
mdNegative.Image = Motif.GetNegativeMotif(widthImage, heightImage);
mdChart.Image = Motif.GetBarChart(pMotif.Width - 6);
return(true);
}
catch { return(false); }
}
private void DisplayMotif()
{
if (Motif == null)
{
return;
}
Settings settings = Settings.Load("default.settings");
int heightImage = 200;
int widthImage = 800;
if (settings != null)
{
heightImage = settings.MotifHeight;
widthImage = settings.MotifWidth;
}
if (Motif.PositiveColumns != null)
{
mdPositive.Image = Motif.GetPositiveMotif(widthImage, heightImage);
}
else if (Motif.Frequencies != null)
{
mdPositive.Image = Motif.GetFrequencyMotif(widthImage, heightImage);
}
else
{
mdPositive.Image = null;
}
if (Motif.NegativeColumns != null)
{
mdNegative.Image = Motif.GetNegativeMotif(widthImage, heightImage);
}
else
{
mdNegative.Visible = false;
mdNegative.Image = null;
}
if (Motif.PositiveColumns != null)
{
mdChart.Image = Motif.GetBarChart(pMotif.Width - 6);
}
else
{
mdChart.Visible = false;
}
ePositiveThreshold.Text = Motif.PositiveThreshold.ToString();
toolTip1.SetToolTip(eScorerPosThreshold, string.Format("Range: [{0:N2}, {1:N2}]", Motif.PositiveThreshold, Motif.MaxPosWeight));
eNegativeThreshold.Text = Motif.NegativeThreshold.ToString();
toolTip1.SetToolTip(eScorerNegThreshold, string.Format("Range: [{0:N2}, {1:N2}]", 0, Motif.NegativeThreshold));
eWildtype.Text = Motif.WildTypePeptide;
eTargetPosition.Text = "";
eTargetAminoAcid.Text = "";
}
private void LoadMotif()
{
DialogResult dlg = dlgOpenMotif.ShowDialog();
if (dlg != DialogResult.OK)
{
return;
}
SetText(dlgOpenMotif);
string filename = dlgOpenMotif.FileName;
try
{
Motif = Motif.ReadFromFile(filename);
}
catch
{
MessageBox.Show("The file may be corrupted or not a valid PeSA motif file.", Analyzer.ProgramName);
}
Settings settings = Settings.Load("default.settings");
int heightImage = 200;
int widthImage = 800;
if (settings != null)
{
heightImage = settings.MotifHeight;
widthImage = settings.MotifWidth;
}
mdPositive.Image = Motif.GetPositiveMotif(widthImage, heightImage);
mdNegative.Image = Motif.GetNegativeMotif(widthImage, heightImage);
mdChart.Image = Motif.GetBarChart(pMotif.Width - 6);
ePositiveThreshold.Text = Motif.PositiveThreshold.ToString();
toolTip1.SetToolTip(eScorerPosThreshold, string.Format("Range: [{0:N2}, {1:N2}]", Motif.PositiveThreshold, Motif.MaxPosWeight));
eNegativeThreshold.Text = Motif.NegativeThreshold.ToString();
toolTip1.SetToolTip(eScorerNegThreshold, string.Format("Range: [{0:N2}, {1:N2}]", 0, Motif.NegativeThreshold));
eWildtype.Text = Motif.WildTypePeptide;
eTarget.Text = "";
}
