protected override void Context()
{
base.Context();
_startValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_importTables = new MsvDataTableProvider().ImportTables();
_importTables.Rows[0][4] = string.Empty;
}
protected override void Context()
{
base.Context();
var moleculeStartValuesBuildingBlock1 = new MoleculeStartValuesBuildingBlock().WithName("Tada");
var moleculeStartValueA = new MoleculeStartValue().WithName("MSVa");
moleculeStartValueA.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
var moleculeStartValueB = new MoleculeStartValue().WithName("MSVb");
moleculeStartValueB.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
moleculeStartValuesBuildingBlock1.Add(moleculeStartValueA);
moleculeStartValuesBuildingBlock1.Add(moleculeStartValueB);
var moleculeStartValuesBuildingBlock2 = new MoleculeStartValuesBuildingBlock().WithName("Tada");
moleculeStartValueA = new MoleculeStartValue().WithName("MSVa");
moleculeStartValueA.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
moleculeStartValueB = new MoleculeStartValue().WithName("MSVb");
moleculeStartValueB.ContainerPath = new ObjectPath("Root", "Liver", "Cell");
moleculeStartValuesBuildingBlock2.Add(moleculeStartValueA);
moleculeStartValuesBuildingBlock2.Add(moleculeStartValueB);
_object1 = moleculeStartValuesBuildingBlock1;
_object2 = moleculeStartValuesBuildingBlock2;
}
protected override void Context()
{
base.Context();
var moleculeStartValuesBuildingBlock1 = new MoleculeStartValuesBuildingBlock().WithName("Tada");
var moleculeStartValueA = new MoleculeStartValue().WithName("MSVa");
moleculeStartValueA.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
var moleculeStartValueB = new MoleculeStartValue().WithName("MSVb");
moleculeStartValueB.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
moleculeStartValuesBuildingBlock1.Add(moleculeStartValueA);
moleculeStartValuesBuildingBlock1.Add(moleculeStartValueB);
var moleculeStartValuesBuildingBlock2 = new MoleculeStartValuesBuildingBlock().WithName("Toto");
moleculeStartValueA = new MoleculeStartValue().WithName("MSVa");
moleculeStartValueA.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
moleculeStartValueB = new MoleculeStartValue().WithName("MSVb");
moleculeStartValueB.ContainerPath = new ObjectPath("Root", "Liver", "Plasma");
moleculeStartValuesBuildingBlock2.Add(moleculeStartValueA);
moleculeStartValuesBuildingBlock2.Add(moleculeStartValueB);
_object1 = moleculeStartValuesBuildingBlock1;
_object2 = moleculeStartValuesBuildingBlock2;
_comparerSettings.OnlyComputingRelevant = false;
}
protected override void Context()
{
base.Context();
_startValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_tables = new MsvDataTableProvider().ImportTables();
_tables.Rows[0][0] = _tables.Rows[1][0];
}
protected override void Context()
{
base.Context();
// We'll need a real building block for this test so that it will return null when asked for a start value from a path
_startValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_tables = new MsvDataTableProvider().ImportTables();
_tables.Rows[0][3] = string.Empty;
}
public void TestComplexMoleculeStartValuesBuildingBlock()
{
MoleculeStartValuesBuildingBlock x1 = _buildConfiguration.MoleculeStartValues as MoleculeStartValuesBuildingBlock;
Assert.IsNotNull(x1);
IMoleculeStartValuesBuildingBlock x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualMoleculeStartValuesBuildingBlock(x2, x1);
}
protected override void Context()
{
base.Context();
_simulation = A.Fake <IMoBiSimulation>();
_templateBuildingBlock = new MoleculeStartValuesBuildingBlock();
_cloneSimulationStartValueBuildingBlock = new MoleculeStartValuesBuildingBlock();
IMoleculeStartValuesBuildingBlock simulationStartValueBuildingBlock = new MoleculeStartValuesBuildingBlock();
A.CallTo(() => _cloneManagerForBuildingBlock.Clone(simulationStartValueBuildingBlock)).Returns(_cloneSimulationStartValueBuildingBlock);
A.CallTo(() => _simulation.BuildConfiguration.MoleculeStartValues).Returns(simulationStartValueBuildingBlock);
}
protected override void Context()
{
base.Context();
_startValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_importTables = new MsvDataTableProvider().ImportTables();
_importTables.Rows[0][4] = string.Empty;
_importTables.Rows[0][3] = string.Empty;
_startValuesBuildingBlock.Add(new MoleculeStartValue {
ContainerPath = ContainerPathFromDataTableRow(_importTables, 0), Name = "Drug", StartValue = 9.0
});
}
protected override void Context()
{
base.Context();
_moBiReactionBuildingBlock = new MoBiReactionBuildingBlock();
_moleculeStartValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_moBiSimulation = A.Fake <IMoBiSimulation>();
_parameterList = new List <IParameter>();
A.CallTo(() => _moBiSimulation.MoBiBuildConfiguration.MoBiReactions).Returns(_moBiReactionBuildingBlock);
A.CallTo(() => _moBiSimulation.MoBiBuildConfiguration.MoleculeStartValues).Returns(_moleculeStartValuesBuildingBlock);
A.CallTo(() => _moBiSimulation.Model.Root.GetAllChildren <IParameter>()).Returns(_parameterList);
}
protected override void Context()
{
base.Context();
_buildingBlock = new MoleculeStartValuesBuildingBlock();
_project = A.Fake <IMoBiProject>();
_options = new SearchOptions()
{
CaseSensitive = false, Expression = "*", Scope = SearchScope.AllOfSameType, RegEx = true, WholeWord = true
};
A.CallTo(() => _context.CurrentProject).Returns(_project);
_otherBuildingBlock = new MoleculeStartValuesBuildingBlock();
A.CallTo(() => _project.MoleculeStartValueBlockCollection).Returns(new [] { _buildingBlock, _otherBuildingBlock });
}
protected override void Context()
{
_moleculeStartValue = new MoleculeStartValue {
Name = "MSV"
};
_moleculeStartValuesBuildingBlock = new MoleculeStartValuesBuildingBlock {
_moleculeStartValue
};
sut = new MoleculeStartValueDTO(_moleculeStartValue, _moleculeStartValuesBuildingBlock)
{
ContainerPath = new ObjectPath("")
};
}
protected override void Context()
{
base.Context();
// We'll need a real building block for this test so that it will return null when asked for a start value from a path
_startValuesBuildingBlock = new MoleculeStartValuesBuildingBlock();
_tables = new MsvDataTableProvider().ImportTables();
_startValuesBuildingBlock.Add(new MoleculeStartValue {
Name = "Drug", ContainerPath = ContainerPathFromDataTableRow(_tables, 0), StartValue = 9.0
});
_tables.Rows[0][3] = string.Empty;
}
protected override void Context()
{
_context = A.Fake <IMoBiContext>();
_moleculeStartValue = new MoleculeStartValue {
Path = new ObjectPath("Path1", "Path2", "Name")
};
_buildingBlock = new MoleculeStartValuesBuildingBlock {
_moleculeStartValue
};
sut = new ChangeMoleculeStartValueNameCommand(
_buildingBlock,
_moleculeStartValue.Path,
"Name2");
A.CallTo(() => _context.Get <IMoleculeStartValuesBuildingBlock>(_buildingBlock.Id)).Returns(_buildingBlock);
}
protected override void Context()
{
base.Context();
_project = new MoBiProject();
var molecule = new MoleculeBuilder().WithName(_moleculeName);
var moleculeParameter = new Parameter().WithName(_moleculeParameterName);
molecule.Add(moleculeParameter);
var molecules = new MoleculeBuildingBlock()
{
molecule
};
_project.AddBuildingBlock(molecules);
var parameter = new Parameter().WithName(_parameterName);
var root = new Container().WithName("Root");
root.Add(parameter);
var spatialStructure = new MoBiSpatialStructure().WithTopContainer(root);
_project.AddBuildingBlock(spatialStructure);
var reactionBuilder = new ReactionBuilder().WithName(_reactionName);
var reactions = new MoBiReactionBuildingBlock()
{
reactionBuilder
};
_project.AddBuildingBlock(reactions);
var msv = new MoleculeStartValue {
Path = new ObjectPath("A", _msvName)
};
var msv2 = new MoleculeStartValue {
Path = new ObjectPath("A", _moleculeName)
};
var moleculeStartValues = new MoleculeStartValuesBuildingBlock()
{
msv, msv2
};
_project.AddBuildingBlock(moleculeStartValues);
A.CallTo(() => _context.CurrentProject).Returns(_project);
}
protected override void Context()
{
base.Context();
_dimension1 = new Dimension(new BaseDimensionRepresentation {
TimeExponent = 1
}, "Time", "min");
_myDefaultUnit = _dimension1.AddUnit("h", 60, 0);
_topContainer = new Container();
_parameter = new Parameter().WithDimension(_dimension1);
_parameter.DisplayUnit = _dimension1.DefaultUnit;
_topContainer.Add(_parameter);
A.CallTo(() => _displayUnitRetriever.PreferredUnitFor(_parameter)).Returns(_myDefaultUnit);
_moleculeStartValueBuildingBlock = new MoleculeStartValuesBuildingBlock();
_moleculeStartValue = new MoleculeStartValue {
Path = new ObjectPath(new[] { "A", "B", "Molecule" }), Dimension = _dimension1
};
_moleculeStartValue.DisplayUnit = _dimension1.DefaultUnit;
_moleculeStartValueBuildingBlock.Add(_moleculeStartValue);
A.CallTo(() => _displayUnitRetriever.PreferredUnitFor(_moleculeStartValue)).Returns(_myDefaultUnit);
}
protected override void Context()
{
base.Context();
_returnedBuildingBlocks = new List <IBuildingBlock>();
_childReactionBuilder = new ReactionBuilder().WithName("Test").WithId("FindME");
_reactionBuildingBlock = new MoBiReactionBuildingBlock()
{
_childReactionBuilder
};
_allBuildingBlocks.Add(_reactionBuildingBlock);
_moleculeBuilder = new MoleculeBuilder();
_moleculeBuildingBlock = new MoleculeBuildingBlock()
{
_moleculeBuilder
};
_allBuildingBlocks.Add(_moleculeBuildingBlock);
_obseverBuilder = new ObserverBuilder();
_observerBuildingBlock = new ObserverBuildingBlock()
{
_obseverBuilder
};
_allBuildingBlocks.Add(_observerBuildingBlock);
_passiveTranportBuilder = new TransportBuilder();
_passiveTranportBuildingBlock = new PassiveTransportBuildingBlock()
{
_passiveTranportBuilder
};
_allBuildingBlocks.Add(_passiveTranportBuildingBlock);
_applicationBuilder = new ApplicationBuilder();
_eventGroupBuildingBlock = new EventGroupBuildingBlock()
{
_applicationBuilder
};
_allBuildingBlocks.Add(_eventGroupBuildingBlock);
_parameter = new Parameter().WithName("Para");
var container = new Container().WithName("Cont");
container.Add(_parameter);
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_parmaeterFactory = A.Fake <IParameterFactory>();
A.CallTo(() => _objectBaseFactory.Create <IContainer>()).Returns(A.Fake <IContainer>());
A.CallTo(() => _objectBaseFactory.Create <IMoBiSpatialStructure>()).Returns(new MoBiSpatialStructure());
var diagramManagerFactory = A.Fake <IDiagramManagerFactory>();
_spatialStructure = new MoBiSpatialStructureFactory(_objectBaseFactory, _parmaeterFactory, A.Fake <IconRepository>(), diagramManagerFactory).Create().DowncastTo <IMoBiSpatialStructure>();
_spatialStructure.AddTopContainer(container);
_allBuildingBlocks.Add(_spatialStructure);
_formula = new ExplicitFormula();
_moleculeBuildingBlock.AddFormula(_formula);
_parameterStartValue = new ParameterStartValue {
Path = new ObjectPath {
"test"
}, StartValue = 1, Dimension = A.Fake <IDimension>()
};
_parameterStartValueBuildingBlock = new ParameterStartValuesBuildingBlock()
{
_parameterStartValue
};
_allBuildingBlocks.Add(_parameterStartValueBuildingBlock);
_moleculeStartValue = new MoleculeStartValue {
ContainerPath = new ObjectPath {
"test"
}, Name = "drug"
};
_moleculeStartValuesBuildingBlock = new MoleculeStartValuesBuildingBlock()
{
_moleculeStartValue
};
_allBuildingBlocks.Add(_moleculeStartValuesBuildingBlock);
}
