// Parses through all pdb-file's lines
void Parse(IEnumerable<string> pdbLines)
{
foreach (string pdbLine in pdbLines)
{
if (pdbLine.StartsWith("REMARK"))
continue;
if (pdbLine.StartsWith("ATOM"))
{
ParseAtom(pdbLine);
}
else if (pdbLine.StartsWith("HETATM"))
{
ParseHetAtom(pdbLine);
}
else if (pdbLine.StartsWith("HELIX"))
{
ParseHelix(pdbLine);
}
else if (pdbLine.StartsWith("SHEET"))
{
ParseSheet(pdbLine);
}
else if (pdbLine.StartsWith("ENDMDL") || pdbLine.StartsWith("END"))
{
Molecule molecule = new Molecule();
molecule.Atoms.AddRange(atoms);
molecule.Chains.AddRange(chains.Values);
molecule.CalculateBonds();
molecules.Add(molecule);
atoms.Clear();
chains.Clear();
}
}
}