public void test_Model_setgetModelHistory()
{
M.setMetaId("_001");
ModelHistory history = new ModelHistory();
ModelCreator mc = new ModelCreator();
Date date = new Date(2005, 12, 30, 12, 15, 45, 1, 2, 0);
mc.setFamilyName("Keating");
mc.setGivenName("Sarah");
mc.setEmail("*****@*****.**");
mc.setOrganisation("UH");
history.addCreator(mc);
history.setCreatedDate(date);
history.setModifiedDate(date);
assertTrue(M.isSetModelHistory() == false);
M.setModelHistory(history);
assertTrue(M.isSetModelHistory() == true);
ModelCreator newMC = history.getCreator(0);
assertTrue(newMC != null);
assertTrue(("Keating" == newMC.getFamilyName()));
assertTrue(("Sarah" == newMC.getGivenName()));
assertTrue(("*****@*****.**" == newMC.getEmail()));
assertTrue(("UH" == newMC.getOrganisation()));
M.unsetModelHistory();
assertTrue(M.isSetModelHistory() == false);
history = null;
mc = null;
}
public void test_L3_Species_ModelHistory()
{
(S).setMetaId("_3");
ModelHistory history = new ModelHistory();
int i = (S).setModelHistory(history);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
assertEquals(false, (S).isSetModelHistory());
ModelCreator mc = new ModelCreator();
Date date = new Date(2005, 12, 30, 12, 15, 45, 1, 2, 0);
mc.setFamilyName("Keating");
mc.setGivenName("Sarah");
mc.setEmail("*****@*****.**");
mc.setOrganisation("UH");
history.addCreator(mc);
history.setCreatedDate(date);
history.setModifiedDate(date);
i = (S).setModelHistory(history);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertEquals(true, (S).isSetModelHistory());
i = (S).unsetModelHistory();
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertEquals(false, (S).isSetModelHistory());
assertTrue((S).getModelHistory() == null);
history = null;
}
public void test_RDFAnnotation_getModelHistory()
{
assertTrue( ! (m == null) );
ModelHistory history = m.getModelHistory();
assertTrue( history != null );
ModelCreator mc = history.getCreator(0);
assertTrue(( "Le Novere" == mc.getFamilyName() ));
assertTrue(( "Nicolas" == mc.getGivenName() ));
assertTrue(( "*****@*****.**" == mc.getEmail() ));
assertTrue(( "EMBL-EBI" == mc.getOrganisation() ));
Date date = history.getCreatedDate();
assertTrue( date.getYear() == 2005 );
assertTrue( date.getMonth() == 2 );
assertTrue( date.getDay() == 2 );
assertTrue( date.getHour() == 14 );
assertTrue( date.getMinute() == 56 );
assertTrue( date.getSecond() == 11 );
assertTrue( date.getSignOffset() == 0 );
assertTrue( date.getHoursOffset() == 0 );
assertTrue( date.getMinutesOffset() == 0 );
assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() ));
date = history.getModifiedDate();
assertTrue( date.getYear() == 2006 );
assertTrue( date.getMonth() == 5 );
assertTrue( date.getDay() == 30 );
assertTrue( date.getHour() == 10 );
assertTrue( date.getMinute() == 46 );
assertTrue( date.getSecond() == 2 );
assertTrue( date.getSignOffset() == 0 );
assertTrue( date.getHoursOffset() == 0 );
assertTrue( date.getMinutesOffset() == 0 );
assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() ));
}
public void test_ModelHistory_addCreator()
{
ModelCreator newMC;
ModelHistory history = new ModelHistory();
assertTrue(history.getNumCreators() == 0);
assertTrue(history != null);
ModelCreator mc = new ModelCreator();
assertTrue(mc != null);
mc.setFamilyName("Keating");
mc.setGivenName("Sarah");
mc.setEmail("*****@*****.**");
mc.setOrganisation("UH");
history.addCreator(mc);
assertTrue(history.getNumCreators() == 1);
mc = null;
newMC = history.getListCreators().get(0);
assertTrue(newMC != null);
assertTrue(("Keating" == newMC.getFamilyName()));
assertTrue(("Sarah" == newMC.getGivenName()));
assertTrue(("*****@*****.**" == newMC.getEmail()));
assertTrue(("UH" == newMC.getOrganisation()));
history = null;
}
public void test_ModelHistory_copyConstructor()
{
ModelHistory mh = new ModelHistory();
ModelCreator mc = new ModelCreator();
mc.setFamilyName("Keating");
mc.setGivenName("Sarah");
mc.setEmail("*****@*****.**");
mh.addCreator(mc);
mc = null;
Date date = new Date(2005, 12, 30, 12, 15, 45, 1, 2, 0);
mh.setCreatedDate(date);
date = null;
assertTrue(mh.getCreatedDate().getMonth() == 12);
assertTrue(mh.getCreatedDate().getSecond() == 45);
assertTrue(((ModelCreator)mh.getCreator(0)).getFamilyName() == "Keating");
ModelHistory mh2 = new ModelHistory(mh);
assertTrue(mh2.getCreatedDate().getMonth() == 12);
assertTrue(mh2.getCreatedDate().getSecond() == 45);
assertTrue(((ModelCreator)mh2.getCreator(0)).getFamilyName() == "Keating");
mh2 = null;
mh = null;
}
public void test_RDFAnnotation2_modelWithHistoryAndCVTerms()
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
c.setFamilyName("Keating");
c.setGivenName("Sarah");
h.addCreator(c);
Date d = new Date(2008, 11, 17, 18, 37, 0, 0, 0, 0);
h.setCreatedDate(d);
h.setModifiedDate(d);
m2.unsetModelHistory();
m2.setModelHistory(h);
CVTerm cv = new CVTerm();
cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER);
cv.setBiologicalQualifierType(libsbml.BQB_IS_VERSION_OF);
cv.addResource("http://www.geneontology.org/#GO:0005892");
m2.addCVTerm(cv);
XMLNode ann = RDFAnnotationParser.parseModelHistory(m2);
string expected = "<annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
" <rdf:Description rdf:about=\"#_000001\">\n" +
" <dc:creator rdf:parseType=\"Resource\">\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:parseType=\"Resource\">\n" +
" <vCard:N rdf:parseType=\"Resource\">\n" +
" <vCard:Family>Keating</vCard:Family>\n" +
" <vCard:Given>Sarah</vCard:Given>\n" +
" </vCard:N>\n" +
" </rdf:li>\n" +
" </rdf:Bag>\n" +
" </dc:creator>\n" +
" <dcterms:created rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
" </dcterms:created>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2008-11-17T18:37:00Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" <bqbiol:isVersionOf>\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:resource=\"http://www.geneontology.org/#GO:0005892\"/>\n" +
" </rdf:Bag>\n" +
" </bqbiol:isVersionOf>\n" +
" </rdf:Description>\n" +
" </rdf:RDF>\n" +
"</annotation>";
if (ann != null)
{
;
}
{
assertEquals(true, equals(expected, ann.toXMLString()));
}
{
}
}
public static dynamic GetTSObject(ModelHistory dynObject)
{
if (dynObject is null)
{
return(null);
}
return(dynObject.teklaObject);
}
public static int Main(string[] args)
{
SBMLDocument d;
int errors;
if (args.Length != 2)
{
Console.Write(Environment.NewLine
+ " usage: addModelHistory <input-filename> <output-filename>" + Environment.NewLine
+ Environment.NewLine);
return(2);
}
d = libsbml.readSBML(args[0]);
errors = (int)d.getNumErrors();
if (errors > 0)
{
Console.Write("Read Error(s):" + Environment.NewLine);
d.printErrors();
Console.Write("Correct the above and re-run." + Environment.NewLine);
}
else
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
c.setFamilyName("Keating");
c.setGivenName("Sarah");
c.setEmail("*****@*****.**");
c.setOrganization("University of Hertfordshire");
long status = h.addCreator(c);
printStatus("Status for addCreator: ", status);
Date date = new Date("1999-11-13T06:54:32");
Date date2 = new Date("2007-11-30T06:54:00-02:00");
status = h.setCreatedDate(date);
printStatus("Set created date: ", status);
status = h.setModifiedDate(date2);
printStatus("Set modified date: ", status);
status = d.getModel().setModelHistory(h);
printStatus("Set model history: ", status);
libsbml.writeSBML(d, args[1]);
}
return(errors);
}
public void test_ModelHistory_addCreator3()
{
ModelHistory mh = new ModelHistory();
ModelCreator mc = null;
int i = mh.addCreator(mc);
assertTrue(i == libsbml.LIBSBML_OPERATION_FAILED);
assertTrue(mh.getNumCreators() == 0);
mh = null;
}
public void test_ModelHistory_create()
{
ModelHistory history = new ModelHistory();
assertTrue(history != null);
assertTrue(history.getListCreators() != null);
assertTrue(history.getCreatedDate() == null);
assertTrue(history.getModifiedDate() == null);
history = null;
}
public void test_RDFAnnotation2_getModelHistory()
{
ModelHistory history = m2.getModelHistory();
assertTrue(history != null);
ModelCreator mc = history.getCreator(0);
assertTrue(("Hucka" == mc.getFamilyName()));
assertTrue(("Mike" == mc.getGivenName()));
assertTrue(("*****@*****.**" == mc.getEmail()));
assertTrue(("BNMC" == mc.getOrganisation()));
ModelCreator mc1 = history.getCreator(1);
assertTrue(("Keating" == mc1.getFamilyName()));
assertTrue(("Sarah" == mc1.getGivenName()));
assertTrue(("*****@*****.**" == mc1.getEmail()));
assertTrue(("UH" == mc1.getOrganisation()));
Date date = history.getCreatedDate();
assertTrue(date.getYear() == 2005);
assertTrue(date.getMonth() == 2);
assertTrue(date.getDay() == 2);
assertTrue(date.getHour() == 14);
assertTrue(date.getMinute() == 56);
assertTrue(date.getSecond() == 11);
assertTrue(date.getSignOffset() == 0);
assertTrue(date.getHoursOffset() == 0);
assertTrue(date.getMinutesOffset() == 0);
assertTrue(("2005-02-02T14:56:11Z" == date.getDateAsString()));
date = history.getModifiedDate();
assertTrue(date.getYear() == 2006);
assertTrue(date.getMonth() == 5);
assertTrue(date.getDay() == 30);
assertTrue(date.getHour() == 10);
assertTrue(date.getMinute() == 46);
assertTrue(date.getSecond() == 2);
assertTrue(date.getSignOffset() == 0);
assertTrue(date.getHoursOffset() == 0);
assertTrue(date.getMinutesOffset() == 0);
assertTrue(("2006-05-30T10:46:02Z" == date.getDateAsString()));
date = history.getModifiedDate(1);
assertTrue(date.getYear() == 2007);
assertTrue(date.getMonth() == 1);
assertTrue(date.getDay() == 16);
assertTrue(date.getHour() == 15);
assertTrue(date.getMinute() == 31);
assertTrue(date.getSecond() == 52);
assertTrue(date.getSignOffset() == 0);
assertTrue(date.getHoursOffset() == 0);
assertTrue(date.getMinutesOffset() == 0);
assertTrue(("2007-01-16T15:31:52Z" == date.getDateAsString()));
}
public void test_ModelHistory_setModifiedDate2()
{
ModelHistory mh = new ModelHistory();
assertTrue(mh != null);
Date date = new Date(200, 13, 76, 56, 89, 90, 0, 0, 0);
int i = mh.setModifiedDate(date);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
assertTrue(mh.isSetModifiedDate() == false);
date = null;
mh = null;
}
public void test_ModelHistory_setCreatedDate2()
{
ModelHistory mh = new ModelHistory();
assertTrue(mh != null);
Date date = new Date("Jan 12");
int i = mh.setCreatedDate(date);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
assertTrue(mh.isSetCreatedDate() == false);
date = null;
mh = null;
}
public void test_ModelHistory_addCreator2()
{
ModelHistory mh = new ModelHistory();
ModelCreator mc = new ModelCreator();
mc.setGivenName("Sarah");
int i = mh.addCreator(mc);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
assertTrue(mh.getNumCreators() == 0);
mc = null;
mh = null;
}
public void test_Model_setModelHistory1()
{
M.setMetaId("_001");
ModelHistory mh = new ModelHistory();
int i = M.setModelHistory(mh);
assertTrue(i == libsbml.LIBSBML_INVALID_OBJECT);
assertEquals(false, M.isSetModelHistory());
i = M.unsetModelHistory();
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertEquals(false, M.isSetModelHistory());
mh = null;
}
public void test_ModelHistory_addCreator1()
{
ModelHistory mh = new ModelHistory();
ModelCreator mc = new ModelCreator();
mc.setFamilyName("Keating");
mc.setGivenName("Sarah");
int i = mh.addCreator(mc);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(mh.getNumCreators() == 1);
mc = null;
mh = null;
}
public void test_RDFAnnotation2_modelWithHistoryAndMultipleModifiedDates()
{
ModelHistory h = new ModelHistory();
ModelCreator c = new ModelCreator();
c.setFamilyName("Keating");
c.setGivenName("Sarah");
h.addCreator(c);
Date d = new Date(2005, 2, 2, 14, 56, 11);
h.setCreatedDate(d);
h.addModifiedDate(d);
h.addModifiedDate(d);
m2.unsetModelHistory();
m2.setModelHistory(h);
XMLNode ann = RDFAnnotationParser.parseModelHistory(m2);
string expected = "<annotation>\n" +
" <rdf:RDF xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:dcterms=\"http://purl.org/dc/terms/\" xmlns:vCard=\"http://www.w3.org/2001/vcard-rdf/3.0#\" xmlns:bqbiol=\"http://biomodels.net/biology-qualifiers/\" xmlns:bqmodel=\"http://biomodels.net/model-qualifiers/\">\n" +
" <rdf:Description rdf:about=\"#_000001\">\n" +
" <dc:creator rdf:parseType=\"Resource\">\n" +
" <rdf:Bag>\n" +
" <rdf:li rdf:parseType=\"Resource\">\n" +
" <vCard:N rdf:parseType=\"Resource\">\n" +
" <vCard:Family>Keating</vCard:Family>\n" +
" <vCard:Given>Sarah</vCard:Given>\n" +
" </vCard:N>\n" +
" </rdf:li>\n" +
" </rdf:Bag>\n" +
" </dc:creator>\n" +
" <dcterms:created rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
" </dcterms:created>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" <dcterms:modified rdf:parseType=\"Resource\">\n" +
" <dcterms:W3CDTF>2005-02-02T14:56:11Z</dcterms:W3CDTF>\n" +
" </dcterms:modified>\n" +
" </rdf:Description>\n" +
" </rdf:RDF>\n" +
"</annotation>";
assertEquals(true, equals(expected, ann.toXMLString()));
}
public void test_ModelHistory_addModifiedDate()
{
ModelHistory history = new ModelHistory();
assertTrue(history != null);
assertTrue(history.isSetModifiedDate() == false);
assertTrue(history.getNumModifiedDates() == 0);
Date date = new Date(2005, 12, 30, 12, 15, 45, 1, 2, 0);
history.addModifiedDate(date);
date = null;
assertTrue(history.getNumModifiedDates() == 1);
assertTrue(history.isSetModifiedDate() == true);
Date newdate = history.getListModifiedDates().get(0);
assertTrue(newdate.getYear() == 2005);
assertTrue(newdate.getMonth() == 12);
assertTrue(newdate.getDay() == 30);
assertTrue(newdate.getHour() == 12);
assertTrue(newdate.getMinute() == 15);
assertTrue(newdate.getSecond() == 45);
assertTrue(newdate.getSignOffset() == 1);
assertTrue(newdate.getHoursOffset() == 2);
assertTrue(newdate.getMinutesOffset() == 0);
Date date1 = new Date(2008, 11, 2, 16, 42, 40, 1, 2, 0);
history.addModifiedDate(date1);
date1 = null;
assertTrue(history.getNumModifiedDates() == 2);
assertTrue(history.isSetModifiedDate() == true);
Date newdate1 = history.getModifiedDate(1);
assertTrue(newdate1.getYear() == 2008);
assertTrue(newdate1.getMonth() == 11);
assertTrue(newdate1.getDay() == 2);
assertTrue(newdate1.getHour() == 16);
assertTrue(newdate1.getMinute() == 42);
assertTrue(newdate1.getSecond() == 40);
assertTrue(newdate1.getSignOffset() == 1);
assertTrue(newdate1.getHoursOffset() == 2);
assertTrue(newdate1.getMinutesOffset() == 0);
history = null;
}
public void test_Validation_ModelHistory3()
{
ModelHistory mh = new ModelHistory();
assertTrue(mh != null);
assertEquals(false, (mh.hasRequiredAttributes()));
Date date = new Date(2007, 12, 30, 12, 15, 45, 1, 2, 0);
mh.setCreatedDate(date);
assertEquals(false, (mh.hasRequiredAttributes()));
mh.setModifiedDate(date);
assertEquals(false, (mh.hasRequiredAttributes()));
ModelCreator mc = new ModelCreator();
mc.setFamilyName("Keating");
mh.addCreator(mc);
assertEquals(false, (mh.hasRequiredAttributes()));
mh = null;
}
public void test_ModelHistory_setModifiedDate1()
{
ModelHistory mh = new ModelHistory();
assertTrue(mh != null);
Date date = new Date("2005-12-30T12:15:32+02:00");
int i = mh.setModifiedDate(date);
assertTrue(i == libsbml.LIBSBML_OPERATION_SUCCESS);
assertTrue(mh.isSetModifiedDate() == true);
assertTrue(date != mh.getModifiedDate());
string dateChar = mh.getModifiedDate().getDateAsString();
assertTrue(("2005-12-30T12:15:32+02:00" == dateChar));
i = mh.setModifiedDate(null);
assertTrue(i == libsbml.LIBSBML_OPERATION_FAILED);
assertTrue(mh.isSetModifiedDate() == true);
date = null;
mh = null;
}
public void test_ModelHistory_setModifiedDate()
{
ModelHistory history = new ModelHistory();
assertTrue(history != null);
assertTrue(history.isSetModifiedDate() == false);
Date date = new Date(2005, 12, 30, 12, 15, 45, 1, 2, 0);
history.setModifiedDate(date);
date = null;
assertTrue(history.isSetModifiedDate() == true);
Date newdate = history.getModifiedDate();
assertTrue(newdate.getYear() == 2005);
assertTrue(newdate.getMonth() == 12);
assertTrue(newdate.getDay() == 30);
assertTrue(newdate.getHour() == 12);
assertTrue(newdate.getMinute() == 15);
assertTrue(newdate.getSecond() == 45);
assertTrue(newdate.getSignOffset() == 1);
assertTrue(newdate.getHoursOffset() == 2);
assertTrue(newdate.getMinutesOffset() == 0);
history = null;
}
