/// <summary>
/// Used to test different narrative constraint generation combinations.
/// </summary>
/// <returns></returns>
public static MockObjectRepository GenerateMockDataset2()
{
MockObjectRepository mockRepo = new MockObjectRepository();
mockRepo.FindOrCreateCodeSystem("SNOMED CT", "6.96");
mockRepo.FindOrCreateCodeSystem("HL7ActStatus", "113883.5.14");
CodeSystem hl7CodeSystem = mockRepo.FindOrCreateCodeSystem("HL7", "1.2.3");
ValueSet genderCodeValueSet = mockRepo.FindOrCreateValueSet("GenderCode", "11.1");
mockRepo.FindOrCreateValueSetMember(genderCodeValueSet, hl7CodeSystem, "M", "Male", "active", "01/02/2012");
mockRepo.FindOrCreateValueSetMember(genderCodeValueSet, hl7CodeSystem, "F", "Female", "active", "01/02/2012");
mockRepo.FindOrCreateValueSetMember(genderCodeValueSet, hl7CodeSystem, "U", "Undetermined", "active", "01/02/2012");
ImplementationGuideType igType = mockRepo.FindOrCreateImplementationGuideType("CDA", "CDA.xsd", "cda", "urn:hl7-org:v3");
ImplementationGuide ig = mockRepo.FindOrAddImplementationGuide(igType, "The IG");
TemplateType docType = mockRepo.FindOrCreateTemplateType(igType, "Document", "ClinicalDocument", "ClinicalDocument", 1);
Template template1 = mockRepo.GenerateTemplate("1.2.3.4.5.6", docType, "Test Template 1", ig, null, null, "Test Description 1", "Test Notes 1");
Template template2 = mockRepo.GenerateTemplate("1.2.3.4.5.6.5", docType, "Test Template 2", ig, null, null, "Test Description 2", "Test Notes 2");
mockRepo.GenerateConstraint(template1, null, null, "value", "SHALL", "1..1", null, null, null, null, null, null);
mockRepo.GenerateConstraint(template1, null, null, "@classCode", "SHALL", "1..1", null, null, "OBS", "Observation", null, mockRepo.CodeSystems.Single(y => y.Id == 2));
mockRepo.GenerateConstraint(template1, null, null, "templateId/@root", "SHALL", "1..1", null, null, "22.4.47", null, null, null);
mockRepo.GenerateConstraint(template1, null, null, "code", "SHALL", "1..1", "CD", null, null, null, null, null);
mockRepo.GenerateConstraint(template1, null, template2, null, "MAY", "0..1", null, null, null, null, null, null);
mockRepo.GenerateConstraint(template1, null, null, "administrativeGenderCode/@code", "SHALL", "1..1", null, "MAY", null, null, mockRepo.ValueSets.Single(y => y.Id == 1), null);
mockRepo.GenerateConstraint(template1, null, null, "statusCode", "SHALL", "1..1", null, null, "completed", "Completed", null, mockRepo.CodeSystems.Single(y => y.Id == 2));
mockRepo.GenerateConstraint(template1, null, null, "code/@code", "SHALL", "1..1", "CD", "SHALL", "1234-X", "Test Disp", null, mockRepo.CodeSystems.Single(y => y.Id == 1));
mockRepo.GenerateConstraint(template1, null, null, "code", "SHALL", "1..1", "CD", "SHALL", "1234-X", "Test Disp", null, mockRepo.CodeSystems.Single(y => y.Id == 1));
Template template3 = mockRepo.GenerateTemplate("1.2.3.4.5.6.7", docType, "Test Template 3", ig, null, null, "Test Description 3", "");
TemplateConstraint template3_c1 = mockRepo.GenerateConstraint(template3, null, null, "code", "SHALL", "1..1");
template3_c1.Category = "TestCategory";
return(mockRepo);
}
public void TestImportExcel()
{
MockObjectRepository tdb = new MockObjectRepository();
var data = Helper.GetSampleContentBytes("Trifolia.Test.DocSamples.ExampleTerminologyImport.xlsx");
TerminologyController controller = new TerminologyController(tdb);
ImportCheckRequest request = new ImportCheckRequest()
{
Data = data,
FirstRowIsHeader = true
};
var response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 1, "Expected an error related to code system not being found");
// Code system is found, first valueset is not found, to be added
var codesystem = tdb.FindOrCreateCodeSystem("Test Code System", "urn:oid:4.3.2.1");
response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 0);
Assert.AreEqual(response.ValueSets.Count, 2);
Assert.IsNull(response.ValueSets[0].Id);
Assert.AreEqual(response.ValueSets[0].ChangeType, ImportValueSetChange.ChangeTypes.Add);
// First valueset is found, name to be updated
var valueset = tdb.FindOrCreateValueSet("Value Set", "urn:oid:1.2.3.4");
response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 0);
Assert.AreEqual(response.ValueSets.Count, 2);
Assert.IsNotNull(response.ValueSets[0].Id);
Assert.AreEqual(response.ValueSets[0].ChangeType, ImportValueSetChange.ChangeTypes.Update);
// First valueset is found, nothing to update
valueset.Name = "Test Valueset 1";
response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 0);
Assert.AreEqual(response.ValueSets.Count, 2);
Assert.IsNotNull(response.ValueSets[0].Id);
Assert.AreEqual(response.ValueSets[0].ChangeType, ImportValueSetChange.ChangeTypes.None);
// Concepts to be added
Assert.AreEqual(response.ValueSets[0].Concepts.Count, 1);
Assert.IsNull(response.ValueSets[0].Concepts[0].Id);
Assert.AreEqual(response.ValueSets[0].Concepts[0].ChangeType, ImportValueSetChange.ChangeTypes.Add);
// Found exact concept, but nothing to update
var concept = tdb.FindOrCreateValueSetMember(valueset, codesystem, "asdf", "TEST", "active", "5/15/2014");
response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 0);
Assert.IsNotNull(response.ValueSets[0].Concepts[0].Id);
Assert.AreEqual(response.ValueSets[0].Concepts[0].ChangeType, ImportValueSetChange.ChangeTypes.None);
// Found exact concept, but update the display
concept.DisplayName = "invalid display";
response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 0);
Assert.IsNotNull(response.ValueSets[0].Concepts[0].Id);
Assert.AreEqual(response.ValueSets[0].Concepts[0].ChangeType, ImportValueSetChange.ChangeTypes.Update);
Assert.AreEqual(response.ValueSets[0].Concepts[0].Code, "asdf");
Assert.AreEqual(response.ValueSets[0].Concepts[0].DisplayName, "TEST");
concept.Status = null;
concept.StatusDate = null;
response = controller.CheckExcelImport(request);
Assert.AreEqual(response.Errors.Count, 0);
Assert.AreEqual(response.ValueSets[0].Concepts[0].ChangeType, ImportValueSetChange.ChangeTypes.Add);
Assert.AreEqual(response.ValueSets[0].Concepts[0].Code, "asdf");
Assert.AreEqual(response.ValueSets[0].Concepts[0].DisplayName, "TEST");
Assert.AreEqual(response.ValueSets[0].Concepts[0].CodeSystemOid, codesystem.Oid);
Assert.AreEqual(response.ValueSets[0].Concepts[0].CodeSystemName, codesystem.Name);
Assert.AreEqual(response.ValueSets[0].Concepts[0].Status, "active");
Assert.AreEqual(response.ValueSets[0].Concepts[0].StatusDate, DateTime.Parse("5/15/2014"));
}
public void MyTestInitialize()
{
tdb = new MockObjectRepository();
// IG Type
ImplementationGuideType cdaType = tdb.FindOrCreateImplementationGuideType("CDA", "cda.xsd", "cda", "urn:hl7-org:v3");
// Template Type
TemplateType docType = tdb.FindOrCreateTemplateType(cdaType, "document", "ClinicalDocument", "ClinicalDocument", 1);
TemplateType secType = tdb.FindOrCreateTemplateType(cdaType, "section", "section", "Section", 2);
TemplateType entType = tdb.FindOrCreateTemplateType(cdaType, "entry", "entry", "Entry", 3);
// Code System
CodeSystem cs1 = tdb.FindOrCreateCodeSystem("SNOMED CT", "6.36");
// Value Set
ValueSet vs1 = tdb.FindOrCreateValueSet("Test Value Set 1", "1.2.3.4");
tdb.FindOrCreateValueSetMember(vs1, cs1, "1234", "Test Member 1");
tdb.FindOrCreateValueSetMember(vs1, cs1, "4321", "Test Member 2");
// Implementation Guide
ImplementationGuide ig1 = tdb.FindOrAddImplementationGuide(cdaType, "Test Implementation Guide 1", publishDate: new DateTime(2012, 1, 1));
// IG Files
byte[] testSchBytes = Helper.GetSampleContentBytes("Trifolia.Test.DocSamples.test.sch");
ImplementationGuideFile testSchFile = tdb.GenerateImplementationGuideFile(ig1, "test.sch", ImplementationGuideFile.ContentTypeSchematron, "text/xml", content: testSchBytes);
this.testSchFileId = testSchFile.Id;
tdb.GenerateImplementationGuideFile(ig1, "voc.xml", ImplementationGuideFile.ContentTypeVocabulary, "text/xml", content: testSchBytes);
tdb.GenerateImplementationGuideFile(ig1, "test1_template1.ent", ImplementationGuideFile.ContentTypeSchematronHelper, "text/xml", content: testSchBytes);
ImplementationGuide ig2 = tdb.FindOrAddImplementationGuide(cdaType, "Test Implementation Guide 2");
// Template 1
Template t1 = tdb.GenerateTemplate("urn:oid:1.2.3.4", docType, "Test Template", ig1, null, null, null);
tdb.GenerateConstraint(t1, null, null, "title", "SHALL", "1..1");
// Template 2
Template t2 = tdb.GenerateTemplate("urn:oid:1.2.3.4.1", docType, "Test Template", ig1, null, null, null);
TemplateConstraint t2_tc1 = tdb.GenerateConstraint(t2, null, null, "title", "SHALL", "1..1");
t2_tc1.Schematron = "count(cda:title)";
TemplateConstraint t2_tc2 = tdb.GeneratePrimitive(t2, null, "SHALL", "This is a test primitive");
tdb.GeneratePrimitive(t2, null, "SHALL", "This is test primitive #2", "count(cda:title) > 0");
// Template 3
Template t3 = tdb.GenerateTemplate("urn:oid:1.2.3.4.2", docType, "Test Template", ig2, null, null, null);
tdb.GenerateConstraint(t1, null, null, "title", "SHOULD", "1..1");
// Template 4
Template t4 = tdb.GenerateTemplate("urn:oid:1.2.3.4.3", docType, "Test Template", ig2, null, null, null);
TemplateConstraint t4_p1 = tdb.GenerateConstraint(t4, null, null, "entryRelationship", "SHALL", "1..1", null, null, null, null, null, null, null, true);
TemplateConstraint t4_p2 = tdb.GenerateConstraint(t4, t4_p1, null, "@typeCode", "SHALL", "1..1", null, null, "DRIV");
TemplateConstraint t4_p3 = tdb.GenerateConstraint(t4, t4_p1, null, "observation", "SHALL", "1..1", null, null, "DRIV", null, null, null, null, true);
}
public static MockObjectRepository GenerateMockDataset4()
{
MockObjectRepository mockRepo = new MockObjectRepository();
Organization internalOrg = mockRepo.FindOrCreateOrganization("Lantana");
Organization testOrg = mockRepo.FindOrCreateOrganization("Test Organization");
ImplementationGuideType igType = mockRepo.FindOrCreateImplementationGuideType(Constants.IGTypeNames.CDA, Constants.IGTypeSchemaLocations.CDA, Constants.IGTypePrefixes.CDA, Constants.IGTypeNamespaces.CDA);
TemplateType docType = mockRepo.FindOrCreateTemplateType(igType, "Document", "ClinicalDocument", "ClinicalDocument", 1);
TemplateType sectionType = mockRepo.FindOrCreateTemplateType(igType, "Section", "Section", "Section", 2);
TemplateType entryType = mockRepo.FindOrCreateTemplateType(igType, "Entry", "entry", "Entry", 3);
TemplateType subEntryType = mockRepo.FindOrCreateTemplateType(igType, "Sub-Entry", "entry", "Entry", 4);
TemplateType otherType = mockRepo.FindOrCreateTemplateType(igType, "Other", string.Empty, string.Empty, 5);
mockRepo.FindOrCreateCodeSystem("SNOMED CT", "urn:oid:2.16.840.1.113883.6.96");
mockRepo.FindOrCreateCodeSystem("LOINC", "urn:oid:2.16.840.1.113883.6.1");
mockRepo.FindOrCreateCodeSystem("HL7ParticipationType", "urn:oid:2.16.840.1.113883.5.90");
mockRepo.FindOrCreateCodeSystem("HL7ActStatus", "urn:oid:113883.5.14");
CodeSystem hl7CodeSystem = mockRepo.FindOrCreateCodeSystem("SNOMED CT", "urn:oid:2.16.840.1.113883.6.96");
var valueSet = mockRepo.FindOrCreateValueSet("Treatment status", "urn:oid:2.16.840.1.114222.4.11.3203");
mockRepo.FindOrCreateValueSetMember(valueSet, hl7CodeSystem, "5561003", "Active");
mockRepo.FindOrCreateValueSetMember(valueSet, hl7CodeSystem, "73425007", "Inactive");
mockRepo.FindOrCreateValueSetMember(valueSet, hl7CodeSystem, "14321245", "On hold");
mockRepo.FindOrCreateValueSetMember(valueSet, hl7CodeSystem, "5382145", "Requested");
mockRepo.FindOrCreateValueSetMember(valueSet, hl7CodeSystem, "7789215", "Cancelled");
ImplementationGuide ig = mockRepo.FindOrCreateImplementationGuide(igType, DS1_IG_NAME, internalOrg);
mockRepo.FindOrCreateImplementationGuide(igType, "Test IG 2", testOrg);
mockRepo.FindOrCreateImplementationGuide(igType, "Test IG 3", internalOrg);
Template template1 = mockRepo.CreateTemplate("1.2.3.4.5", docType, "Test Template 1", ig, null, null, "Test Description 2", "Template Level Note for Test Template 1");
template1.Notes = "Template Level Note for Test Template 1";
mockRepo.AddConstraintToTemplate(template1, null, null, "code", "SHALL", "1..1", "CD", "SHALL", "51897-7", "Test Disp", null, mockRepo.CodeSystems.Single(y => y.Id == 2));
TemplateConstraint t1 = mockRepo.AddConstraintToTemplate(template1, null, null, "participant", "SHALL", "1..1", "CD", "SHALL", null, null, null, null, null, true, true);
mockRepo.AddConstraintToTemplate(template1, t1, null, "@typeCode", "SHALL", "1..1", null, "SHALL", "LOC", "Location", null, mockRepo.CodeSystems.Single(y => y.Id == 3));
// Primitive constraint
mockRepo.AddPrimitiveToTemplate(template1, null, "SHALL", "A templateId element SHALL be present representing conformance to this release of the Implementation Guide");
template1.TemplateSamples.Add(new TemplateSample()
{
XmlSample = @"<observation/>",
Name = "Test_Template_1_Example"
});
// Basic constraint
TemplateConstraint t1tc1 = mockRepo.AddConstraintToTemplate(template1, null, null, "templateId", "SHALL", "1..1", "CD", null, null, null, null, null, null, null, null);
t1tc1.Notes = "Constraint *TemplateId* Note for Test Template 1";
// Basic Constraint with a child
TemplateConstraint t1tc2 = mockRepo.AddConstraintToTemplate(template1, null, null, "code", "SHALL", "1..1");
TemplateConstraint t1tc2_2 = mockRepo.AddConstraintToTemplate(template1, t1tc2, null, "@value", "SHALL", "1..1", null, null, "236435004", "Test Static Value", null, mockRepo.CodeSystems.Single(y => y.Id == 1));
// Constraint with a child (child has valueset)
ValueSet t1tc3_vs = mockRepo.FindOrCreateValueSet("Test Valueset", "9.8.7.6.5.4.3.2.1");
TemplateConstraint t1tc3 = mockRepo.AddConstraintToTemplate(template1, null, null, "code", "SHALL", "1..1");
//TemplateConstraint t1tc3_1 = mockRepo.AddConstraintToTemplate(template1, t1tc3, null, "@code", "SHALL", "1..1", "CE", "SHALL", null, null, t1tc3_vs);
TemplateConstraint t1tc3_1 = mockRepo.AddConstraintToTemplate(template1, t1tc3, null, "@code", "SHALL", "1..1", "CE", "SHALL", "55561003", "Active", mockRepo.ValueSets.Single(y => y.Id == 1));
t1tc3.Notes = "Child *code* constraint with Value Set Notes";
t1tc3_1.IsStatic = true;
Template template2 = mockRepo.CreateTemplate("1.2.3.4.5.6", docType, "Test Template 2", ig, null, null, "Test Description 1", "Template Level Note for Test Template 2");
template2.ImpliedTemplate = template1;
// Constraint with a child
TemplateConstraint t2tc1 = mockRepo.AddConstraintToTemplate(template2, null, null, "code", "SHALL", "1..1");
Template template3 = mockRepo.CreateTemplate("1.2.3.4.5.6.7", docType, "Test Template 3", ig, null, null, "Test Description 3", "Template Level Note for Test Template 3");
TemplateConstraint t3tc1 = mockRepo.AddConstraintToTemplate(template3, null, template2, null, "SHALL", "1..1");
TemplateConstraint t3tc2 = mockRepo.AddConstraintToTemplate(template3, null, null, "entry", "SHALL", "1..1");
TemplateConstraint t3tc2_1 = mockRepo.AddConstraintToTemplate(template3, t3tc2, template2, "observation", "SHALL", "1..1");
Template template4 = mockRepo.CreateTemplate("8.2234.19.234.11", docType, "Test Constraint Description Template", ig, null, null, null, null);
mockRepo.AddConstraintToTemplate(template4, null, null, "code", "SHALL", "1..1", "CD", null, null, null, null, null, "Test constraint description");
// Create a new version of the implementation guide
ImplementationGuide igVersion = mockRepo.FindOrCreateImplementationGuide(igType, DS1_IG_NAME + " Version 2");
igVersion.SetPreviousVersion(ig);
igVersion.Version = 2;
// Create a new version of template 3 within the new version of the IG
Template template3Version = mockRepo.CreateTemplate("urn:hl7ii:1.2.3.4.5.6.7:20180117", docType, "Test Template 3", igVersion, null, null, "Test Description 3 with changes", "Test Note 3 with changes");
template3Version.SetPreviousVersion(template3);
// Create an entirely new template for the new version of the IG
Template template4Version = mockRepo.CreateTemplate("urn:oid:1.2.3.4.1.2.3.4", sectionType, "Test Template 4", igVersion);
var t4tc1 = mockRepo.AddConstraintToTemplate(template4Version, null, null, "component", "SHALL", "1..1");
mockRepo.AddConstraintToTemplate(template4Version, t4tc1, null, "section", "SHALL", "1..1");
return(mockRepo);
}
