public string ToLogString()
{
var sb = new StringBuilder()
.AppendLine($"[{nameof(AnalysisLaunchContext)}]")
.AppendLine($"ShowAnalysisWindow: '{ShowAnalysisWindow.ToString()}'")
.AppendLine($"MaxDegreeOfParallelism: '{MaxDegreeOfParallelism.ToString()}'")
.AppendLine($"ShowResults: '{ShowResults.ToString()}'");
return(sb.ToString());
}
public Orchestrator()
{
_maxDegreeOfParallelism = new MaxDegreeOfParallelism(Environment.ProcessorCount / 2, 2);
_workingDirectory = UserConfig.workingDirectory;
_logFile = UserConfig.logFile;
_sectionTitle = "Chromosome";
int32Comparer = new Int32Comparer();
samplesHashtable = new Dictionary <int, uint>();
_stopWatch = new Stopwatch();
_parserSTW = new Stopwatch();
_commitSTW = new Stopwatch();
_indexSTW = new Stopwatch();
_cacheOptions = new CacheOptions(
CacheMaximumHistory: UserConfig.maxCacheSize, //163840,//81920,
CacheMinimumHistory: UserConfig.minCacheSize, //20240,
CacheKeepAliveTimeOut: 600000,
CachePolicy: CSharpTest.Net.Collections.CachePolicy.Recent);
di4B = new Di4B <int, Peak, PeakData>(_workingDirectory, _sectionTitle, UserConfig.memory, HDDPerformance.Fastest, UserConfig.indexType, _cacheOptions, PrimitiveSerializer.Int32, int32Comparer);
}
private bool SetPD(string[] args)
{
int chrDP = 0, di4DP = 0;
if (args.Length != 3 || !int.TryParse(args[1], out chrDP) || !int.TryParse(args[2], out di4DP))
{
Herald.Announce(Herald.MessageType.Error, "Invalid arguments");
return(false);
}
if (chrDP == 0)
{
Herald.Announce(Herald.MessageType.Error, "Invalid arguments; at least one thread for Chr level is required.");
return(false);
}
if (di4DP == 0)
{
Herald.Announce(Herald.MessageType.Error, "Invalid arguments; at least one thread for Di4 level is required.");
return(false);
}
_maxDegreeOfParallelism = new MaxDegreeOfParallelism(chrDP, di4DP);
return(GetPD());
}
private bool CanExecute()
{
return
(MaxDegreeOfParallelism.Equals(DegreeOfParallelism.Unlimited) ||
Count < MaxDegreeOfParallelism);
}
