/// <summary>
/// Calculates the Percentiles [0;1] of an Item. MaxEntriesInMemory is used to reduce the memory consumption by sweeping multiple times. Units is MB of memory
/// </summary>
public void Percentile(int Item, int[] TSteps, DFSBase df, double[] Percentiles, int MaxEntriesInMemory)
{
//List counts percentiles
float[][] OutData = new float[Percentiles.Count()][];
for (int i = 0; i < Percentiles.Count(); i++)
OutData[i] = new float[dfsdata.Count()];
List<int> steps = new List<int>();
steps.Add(0);
//Get the delete values
float delete = DfsDLLWrapper.dfsGetDeleteValFloat(_headerPointer);
//Read first time step and create a list with the indeces of non-delete values
ReadItemTimeStep(0, Item);
List<int> NonDeleteEntries = new List<int>();
for (int i = 0; i < dfsdata.Length; i++)
if (dfsdata[i] != delete)
NonDeleteEntries.Add(i);
//Find out how many sweeps are necessary to not exceed max memory
double TotalData = (double)NonDeleteEntries.Count * (double)TSteps.Count();
if (TotalData > (MaxEntriesInMemory*40000))
{
int nsteps = (int) Math.Max( TotalData / (MaxEntriesInMemory*40000),1);
int StepLength = NonDeleteEntries.Count() / nsteps;
for (int i = 0; i < nsteps; i++)
steps.Add(steps.Last() + StepLength);
}
steps.Add(NonDeleteEntries.Count);
//Now start the loop
for (int m = 0; m < steps.Count-1; m++)
{
int dfscount = steps[m + 1] - steps[m];
//First iterater is dfsdata
float[][] Data = new float[dfscount][];
for (int i = 0; i < Data.Count(); i++)
Data[i] = new float[TSteps.Count()];
//Collect all data
for (int i = 0; i < TSteps.Count(); i++)
{
var data = ReadItemTimeStep(TSteps[i], Item);
int local = 0;
for (int k = steps[m]; k < steps[m + 1]; k++)
{
Data[local][i] = (dfsdata[NonDeleteEntries[k]]);
local++;
}
}
int local2 = 0;
for (int k = steps[m]; k < steps[m + 1]; k++)
{
//Convert to doubles from float
double[] ddata = new double[TSteps.Count()];
for (int n = 0; n < TSteps.Count(); n++)
ddata[n]=Data[local2][n];
//Calculate the percentile
MathNet.Numerics.Statistics.Percentile pCalc = new MathNet.Numerics.Statistics.Percentile(ddata);
pCalc.Method = MathNet.Numerics.Statistics.PercentileMethod.Excel;
var p = pCalc.Compute(Percentiles);
for (int l = 0; l < Percentiles.Count(); l++)
OutData[l][NonDeleteEntries[k]] = (float)p[l];
local2++;
}
}
//Insert deletevalues in output data
for (int i = 0; i < dfsdata.Length; i++)
{
if (!NonDeleteEntries.Contains(i))
{
for (int l = 0; l < Percentiles.Count(); l++)
OutData[l][i] = delete;
}
}
//Set Item infor
for (int i = 0; i < Percentiles.Count(); i++)
{
df.Items[i].EumItem = Items[Item - 1].EumItem;
df.Items[i].EumUnit = Items[Item - 1].EumUnit;
df.Items[i].Name = Percentiles[i].ToString() + " percentile";
}
for (int i = 0; i < Percentiles.Count(); i++)
{
df.WriteItemTimeStep(0, i + 1, OutData[i]);
}
}
public void DebugPrint(string Directory)
{
//We need to process data for extra output while we have the particles
{
foreach (var c in Catchments.Where(ca => ca.EndParticles.Count >= 1))
{
if (c.EndParticles.Count >= 20)
{
c.ParticleBreakthroughCurves = new List <Tuple <double, double> >();
MathNet.Numerics.Statistics.Percentile p = new MathNet.Numerics.Statistics.Percentile(c.EndParticles.Select(pa => pa.TravelTime));
for (int i = 1; i < np; i++)
{
c.ParticleBreakthroughCurves.Add(new Tuple <double, double>(i / np * 100.0, p.Compute(i / np)));
}
//Also do oxidized breakthrough curves
if (c.EndParticles.Count(pp => pp.Registration != 1) >= 20)
{
c.ParticleBreakthroughCurvesOxidized = new List <Tuple <double, double> >();
p = new MathNet.Numerics.Statistics.Percentile(c.EndParticles.Where(pp => pp.Registration != 1).Select(pa => pa.TravelTime));
for (int i = 1; i < np; i++)
{
c.ParticleBreakthroughCurvesOxidized.Add(new Tuple <double, double>(i / np * 100.0, p.Compute(i / np)));
}
}
}
DataRow row = DebugData.Rows.Find(c.ID);
if (row == null)
{
row = DebugData.NewRow();
row[0] = c.ID;
DebugData.Rows.Add(row);
}
row["PartCount"] = c.EndParticles.Count;
row["RedoxCount"] = c.EndParticles.Count(pp => pp.Registration == 1);
row["RedoxRatio"] = c.EndParticles.Count(pp => pp.Registration == 1) / (double)c.EndParticles.Count;
if (c.EndParticles.Count > 0)
{
row["Drain_to_River"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.Drain_to_River) / (double)c.EndParticles.Count;
row["Drain_to_Boundary"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.Drain_to_Boundary) / (double)c.EndParticles.Count;
row["Unsaturated_zone"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.Unsaturated_zone) / (double)c.EndParticles.Count;
row["River"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.River) / (double)c.EndParticles.Count;
}
row["PartCount_start"] = c.StartParticles.Count;
}
}
NewMessage("Writing breakthrough curves");
var selectedCatchments = Catchments.Where(cc => cc.ParticleBreakthroughCurves != null);
using (System.IO.StreamWriter sw = new System.IO.StreamWriter(Path.Combine(Directory, "BC.csv")))
{
StringBuilder headline = new StringBuilder();
headline.Append("ID\tNumber of Particles");
for (int i = 1; i < np; i++)
{
headline.Append("\t + " + (i / np * 100.0));
}
sw.WriteLine(headline);
foreach (var c in selectedCatchments.Where(cc => cc.ParticleBreakthroughCurves != null))
{
StringBuilder line = new StringBuilder();
line.Append(c.ID + "\t" + c.EndParticles.Count);
foreach (var pe in c.ParticleBreakthroughCurves)
{
line.Append("\t" + pe.Item2);
}
sw.WriteLine(line);
}
}
if (selectedCatchments.Count() > 0)
{
using (ShapeWriter sw = new ShapeWriter(Path.Combine(Directory, Name + "_debug.shp"))
{
Projection = MainModel.projection
})
{
foreach (var bc in selectedCatchments.First().ParticleBreakthroughCurves)
{
DebugData.Columns.Add(((int)bc.Item1).ToString(), typeof(double));
}
foreach (var bc in selectedCatchments.First().ParticleBreakthroughCurves)
{
DebugData.Columns.Add(((int)bc.Item1).ToString() + "Ox", typeof(double));
}
foreach (var c in selectedCatchments)
{
GeoRefData gd = new GeoRefData()
{
Geometry = c.Geometry
};
var row = DebugData.Rows.Find(c.ID);
if (c.ParticleBreakthroughCurves != null)
{
foreach (var bc in c.ParticleBreakthroughCurves)
{
row[((int)bc.Item1).ToString()] = bc.Item2;
}
}
if (c.ParticleBreakthroughCurvesOxidized != null)
{
foreach (var bc in c.ParticleBreakthroughCurvesOxidized)
{
row[((int)bc.Item1).ToString() + "Ox"] = bc.Item2;
}
}
gd.Data = row;
sw.Write(gd);
}
}
}
//selectedCatchments = Catchments.Where(cc => cc.EndParticles.Count > 0).ToList();
//foreach (var c in selectedCatchments)
//{
// DataTable dt = new DataTable();
// dt.Columns.Add("Part_Id", typeof(int));
// dt.Columns.Add("Sink", typeof(string));
// dt.Columns.Add("Reg", typeof(int));
// using (ShapeWriter sw = new ShapeWriter(Path.Combine(Directory, c.ID + "_particles.shp")) { Projection = MainModel.projection })
// {
// foreach (var p in c.EndParticles)
// {
// var row = dt.NewRow();
// row["Part_Id"] = p.ID;
// row["Sink"] = p.SinkType.ToString();
// row["Reg"] = p.Registration;
// sw.Write(new GeoRefData() { Geometry = new XYLine(p.XStart, p.YStart, p.X, p.Y), Data = row });
// }
// }
//}
}
/// <summary>
/// Calculates the Percentiles [0;1] of an Item. MaxEntriesInMemory is used to reduce the memory consumption by sweeping multiple times. Units is MB of memory
/// </summary>
public void Percentile(int Item, int[] TSteps, DFSBase df, double[] Percentiles, int MaxEntriesInMemory)
{
//List counts percentiles
float[][] OutData = new float[Percentiles.Count()][];
for (int i = 0; i < Percentiles.Count(); i++)
{
OutData[i] = new float[dfsdata.Count()];
}
List <int> steps = new List <int>();
steps.Add(0);
//Get the delete values
float delete = DfsDLLWrapper.dfsGetDeleteValFloat(_headerPointer);
//Read first time step and create a list with the indeces of non-delete values
ReadItemTimeStep(0, Item);
List <int> NonDeleteEntries = new List <int>();
for (int i = 0; i < dfsdata.Length; i++)
{
if (dfsdata[i] != delete)
{
NonDeleteEntries.Add(i);
}
}
//Find out how many sweeps are necessary to not exceed max memory
double TotalData = (double)NonDeleteEntries.Count * (double)TSteps.Count();
if (TotalData > (MaxEntriesInMemory * 40000))
{
int nsteps = (int)Math.Max(TotalData / (MaxEntriesInMemory * 40000), 1);
int StepLength = NonDeleteEntries.Count() / nsteps;
for (int i = 0; i < nsteps; i++)
{
steps.Add(steps.Last() + StepLength);
}
}
steps.Add(NonDeleteEntries.Count);
//Now start the loop
for (int m = 0; m < steps.Count - 1; m++)
{
int dfscount = steps[m + 1] - steps[m];
//First iterater is dfsdata
float[][] Data = new float[dfscount][];
for (int i = 0; i < Data.Count(); i++)
{
Data[i] = new float[TSteps.Count()];
}
//Collect all data
for (int i = 0; i < TSteps.Count(); i++)
{
var data = ReadItemTimeStep(TSteps[i], Item);
int local = 0;
for (int k = steps[m]; k < steps[m + 1]; k++)
{
Data[local][i] = (dfsdata[NonDeleteEntries[k]]);
local++;
}
}
int local2 = 0;
for (int k = steps[m]; k < steps[m + 1]; k++)
{
//Convert to doubles from float
double[] ddata = new double[TSteps.Count()];
for (int n = 0; n < TSteps.Count(); n++)
{
ddata[n] = Data[local2][n];
}
//Calculate the percentile
MathNet.Numerics.Statistics.Percentile pCalc = new MathNet.Numerics.Statistics.Percentile(ddata);
pCalc.Method = MathNet.Numerics.Statistics.PercentileMethod.Excel;
var p = pCalc.Compute(Percentiles);
for (int l = 0; l < Percentiles.Count(); l++)
{
OutData[l][NonDeleteEntries[k]] = (float)p[l];
}
local2++;
}
}
//Insert deletevalues in output data
for (int i = 0; i < dfsdata.Length; i++)
{
if (!NonDeleteEntries.Contains(i))
{
for (int l = 0; l < Percentiles.Count(); l++)
{
OutData[l][i] = delete;
}
}
}
//Set Item infor
for (int i = 0; i < Percentiles.Count(); i++)
{
df.Items[i].EumItem = Items[Item - 1].EumItem;
df.Items[i].EumUnit = Items[Item - 1].EumUnit;
df.Items[i].Name = Percentiles[i].ToString() + " percentile";
}
for (int i = 0; i < Percentiles.Count(); i++)
{
df.WriteItemTimeStep(0, i + 1, OutData[i]);
}
}
public void DebugPrint(string Directory)
{
//We need to process data for extra output while we have the particles
{
foreach (var c in Catchments.Where(ca => ca.EndParticles.Count >= 1))
{
if (c.EndParticles.Count >= 20)
{
c.ParticleBreakthroughCurves = new List<Tuple<double, double>>();
MathNet.Numerics.Statistics.Percentile p = new MathNet.Numerics.Statistics.Percentile(c.EndParticles.Select(pa => pa.TravelTime));
for (int i = 1; i < np; i++)
{
c.ParticleBreakthroughCurves.Add(new Tuple<double, double>(i / np * 100.0, p.Compute(i / np)));
}
//Also do oxidized breakthrough curves
if (c.EndParticles.Count(pp => pp.Registration != 1) >= 20)
{
c.ParticleBreakthroughCurvesOxidized = new List<Tuple<double, double>>();
p = new MathNet.Numerics.Statistics.Percentile(c.EndParticles.Where(pp => pp.Registration != 1).Select(pa => pa.TravelTime));
for (int i = 1; i < np; i++)
{
c.ParticleBreakthroughCurvesOxidized.Add(new Tuple<double, double>(i / np * 100.0, p.Compute(i / np)));
}
}
}
DataRow row = DebugData.Rows.Find(c.ID);
if (row == null)
{
row = DebugData.NewRow();
row[0] = c.ID;
DebugData.Rows.Add(row);
}
row["PartCount"] = c.EndParticles.Count;
row["RedoxCount"] = c.EndParticles.Count(pp => pp.Registration == 1);
row["RedoxRatio"] = c.EndParticles.Count(pp => pp.Registration == 1) / (double)c.EndParticles.Count;
if (c.EndParticles.Count > 0)
{
row["Drain_to_River"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.Drain_to_River) / (double)c.EndParticles.Count;
row["Drain_to_Boundary"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.Drain_to_Boundary) / (double)c.EndParticles.Count;
row["Unsaturated_zone"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.Unsaturated_zone) / (double)c.EndParticles.Count;
row["River"] = c.EndParticles.Count(pa => pa.SinkType == SinkType.River) / (double)c.EndParticles.Count;
}
row["PartCount_start"] = c.StartParticles.Count;
}
}
NewMessage("Writing breakthrough curves");
var selectedCatchments = Catchments.Where(cc => cc.ParticleBreakthroughCurves != null);
using (System.IO.StreamWriter sw = new System.IO.StreamWriter(Path.Combine(Directory, "BC.csv")))
{
StringBuilder headline = new StringBuilder();
headline.Append("ID\tNumber of Particles");
for (int i = 1; i < np; i++)
{
headline.Append("\t + " + (i / np * 100.0));
}
sw.WriteLine(headline);
foreach (var c in selectedCatchments.Where(cc => cc.ParticleBreakthroughCurves != null))
{
StringBuilder line = new StringBuilder();
line.Append(c.ID + "\t" + c.EndParticles.Count);
foreach (var pe in c.ParticleBreakthroughCurves)
{
line.Append("\t" + pe.Item2);
}
sw.WriteLine(line);
}
}
if (selectedCatchments.Count() > 0)
{
using (ShapeWriter sw = new ShapeWriter(Path.Combine(Directory, Name + "_debug.shp")))
{
foreach (var bc in selectedCatchments.First().ParticleBreakthroughCurves)
{
DebugData.Columns.Add(((int)bc.Item1).ToString(), typeof(double));
}
foreach (var bc in selectedCatchments.First().ParticleBreakthroughCurves)
{
DebugData.Columns.Add(((int)bc.Item1).ToString() + "Ox", typeof(double));
}
foreach (var c in selectedCatchments)
{
GeoRefData gd = new GeoRefData() { Geometry = c.Geometry };
var row = DebugData.Rows.Find(c.ID);
if (c.ParticleBreakthroughCurves != null)
foreach (var bc in c.ParticleBreakthroughCurves)
row[((int)bc.Item1).ToString()] = bc.Item2;
if (c.ParticleBreakthroughCurvesOxidized != null)
foreach (var bc in c.ParticleBreakthroughCurvesOxidized)
row[((int)bc.Item1).ToString() + "Ox"] = bc.Item2;
gd.Data = row;
sw.Write(gd);
}
}
}
//selectedCatchments = Catchments.Where(cc => cc.EndParticles.Count > 0).ToList();
//foreach (var c in selectedCatchments)
//{
// DataTable dt = new DataTable();
// dt.Columns.Add("Part_Id", typeof(int));
// dt.Columns.Add("Sink", typeof(string));
// dt.Columns.Add("Reg", typeof(int));
// using (ShapeWriter sw = new ShapeWriter(Path.Combine(Directory, c.ID + "_particles.shp")) { Projection = MainModel.projection })
// {
// foreach (var p in c.EndParticles)
// {
// var row = dt.NewRow();
// row["Part_Id"] = p.ID;
// row["Sink"] = p.SinkType.ToString();
// row["Reg"] = p.Registration;
// sw.Write(new GeoRefData() { Geometry = new XYLine(p.XStart, p.YStart, p.X, p.Y), Data = row });
// }
// }
//}
}