public void TestReadAffymetrixFile()
{
var actual = new Level3MicroarrayDataTxtReader().ReadFromFile("../../../data/DURUM_p_TCGA_B22_23_Expr_HT_HG-U133A_96-HTA_A10_543742.level3.data.txt");
Assert.AreEqual(12042, actual.Values.Count);
Assert.AreEqual("AACS", actual.Values.First().Name);
Assert.AreEqual(6.67288, actual.Values.First().Value, 0.00001);
Assert.AreEqual("AQP7", actual.Values.Last().Name);
Assert.AreEqual(3.61720, actual.Values.Last().Value, 0.001);
Assert.IsFalse(actual.IsLog2Value);
}
public void TestReadAgilentFile()
{
var actual = new Level3MicroarrayDataTxtReader().ReadFromFile("../../../data/US82800149_251976011805_S01_GE2_105_Dec08.txt_lmean.out.logratio.gene.tcga_level3.data.txt");
Assert.AreEqual(17814, actual.Values.Count);
Assert.AreEqual("ELMO2", actual.Values.First().Name);
Assert.AreEqual(1.21942, actual.Values.First().Value, 0.00001);
Assert.AreEqual("CTSC", actual.Values.Last().Name);
Assert.AreEqual(-1.201, actual.Values.Last().Value, 0.001);
Assert.IsTrue(actual.IsLog2Value);
var opn5 = actual.Values.Find(m => m.Name.Equals("OPN5"));
Assert.NotNull(opn5);
Assert.IsNaN(opn5.Value);
}
