public void AddFrequencies(KNucleotide other)
{
foreach (var kvp in other.frequencies)
{
Count count;
if (frequencies.TryGetValue(kvp.Key, out count))
{
count.V += kvp.Value.V;
}
else
{
frequencies[kvp.Key] = kvp.Value;
}
}
}
public void AddFrequencies(KNucleotide other)
{
foreach (var kvp in other.frequencies)
{
KNucleotideNode kNucleotideNode;
if (frequencies.TryGetValue(kvp.Key, out kNucleotideNode))
{
kNucleotideNode.V += kvp.Value.V;
}
else
{
frequencies[kvp.Key] = kvp.Value;
}
}
}
public static void Main(string[] args)
{
string line;
StreamReader source = new StreamReader(Console.OpenStandardInput());
var input = new List <string>();
while ((line = source.ReadLine()) != null)
{
if (line[0] == '>' && line.Substring(1, 5) == "THREE")
{
break;
}
}
while ((line = source.ReadLine()) != null)
{
char c = line[0];
if (c == '>')
{
break;
}
if (c != ';')
{
input.Add(line.ToUpper());
}
}
KNucleotide kn = new KNucleotide(input.GetBytes());
input = null;
for (int f = 1; f < 3; f++)
{
kn.WriteFrequencies(f);
}
foreach (var seq in
new[] { "GGT", "GGTA", "GGTATT", "GGTATTTTAATT",
"GGTATTTTAATTTATAGT" })
{
kn.WriteCount(seq);
}
}
public static void Main(string[] args)
{
string line;
StreamReader source = new StreamReader(Console.OpenStandardInput());
StringBuilder input = new StringBuilder();
while ((line = source.ReadLine()) != null)
{
if (line[0] == '>' && line.Substring(1, 5) == "THREE")
{
break;
}
}
while ((line = source.ReadLine()) != null)
{
char c = line[0];
if (c == '>')
{
break;
}
if (c != ';')
{
input.Append(line.ToUpper());
}
}
KNucleotide kn = new KNucleotide(input.ToString());
input = null;
kn.WriteFrequencies(1);
kn.WriteFrequencies(2);
kn.WriteCount("GGT");
kn.WriteCount("GGTA");
kn.WriteCount("GGTATT");
kn.WriteCount("GGTATTTTAATT");
kn.WriteCount("GGTATTTTAATTTATAGT");
}
public static void Main(string[] args)
{
string line;
StreamReader source = new StreamReader(Console.OpenStandardInput());
var input = new List <string>();
while ((line = source.ReadLine()) != null)
{
if (line[0] == '>' && line.Substring(1, 5) == "THREE")
{
break;
}
}
while ((line = source.ReadLine()) != null)
{
char c = line[0];
if (c == '>')
{
break;
}
if (c != ';')
{
input.Add(line.ToUpper());
}
}
var lengths = new [] { 1, 2, 3, 4, 6, 12, 18 };
TaskCount = lengths.Aggregate(0, (cnt, len) => cnt + len);
kna = new KNucleotide[TaskCount];
var bytes = input.GetBytes();
lengths.Aggregate(0, (cnt, len) =>
{
for (int i = 0; i < len; i++)
{
kna[cnt + i] = new KNucleotide(bytes, len, i);
}
return(cnt + len);
});
var threads = new Thread[Environment.ProcessorCount];
for (int i = 0; i < threads.Length; i++)
{
(threads[i] = new Thread(CountFrequencies)).Start();
}
foreach (var t in threads)
{
t.Join();
}
var seqs = new[] { null, null,
"GGT", "GGTA", "GGTATT", "GGTATTTTAATT",
"GGTATTTTAATTTATAGT" };
int index = 0;
lengths.Aggregate(0, (cnt, len) =>
{
if (len < 3)
{
for (int i = 1; i < len; i++)
{
kna[cnt].AddFrequencies(kna[cnt + i]);
}
kna[cnt].WriteFrequencies();
}
else
{
var fragment = seqs[index];
int freq = 0;
for (int i = 0; i < len; i++)
{
freq += kna[cnt + i].GetCount(fragment);
}
Console.WriteLine("{0}\t{1}", freq, fragment);
}
index++;
return(cnt + len);
});
}