//---------------------------------------------------------------------
public override void InitializeSites(string initialCommunities,
string initialCommunitiesMap)
{
UI.WriteLine("Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser(Timestep, Model.Core.Species);
InitialCommunities.IDataset communities = Data.Load <InitialCommunities.IDataset>(initialCommunities, parser);
UI.WriteLine("Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster <InitialCommunities.Pixel> map;
map = Model.Core.OpenRaster <InitialCommunities.Pixel>(initialCommunitiesMap);
using (map) {
foreach (Site site in Model.Core.Landscape.AllSites)
{
InitialCommunities.Pixel pixel = map.ReadPixel();
ActiveSite activeSite = site as ActiveSite;
if (activeSite == null)
{
continue;
}
ushort mapCode = pixel.Band0;
ICommunity community = communities.Find(mapCode);
if (community == null)
{
throw new PixelException(activeSite.Location,
"Unknown map code for initial community: {0}",
mapCode);
}
InitializeSite(activeSite, community);
}
}
base.Cohorts = Model.Core.SuccessionCohorts;
}
//---------------------------------------------------------------------
public void InitializeSites(string initialCommunities,
string initialCommunitiesMap)
{
Log.Info("Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser();
InitialCommunities.IDataset communities = Data.Load<InitialCommunities.IDataset>(initialCommunities, parser);
Log.Info("Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster<InitialCommunities.Pixel> map;
map = Util.Raster.Open<InitialCommunities.Pixel>(initialCommunitiesMap);
using (map) {
foreach (Site site in Model.Landscape.AllSites) {
InitialCommunities.Pixel pixel = map.ReadPixel();
ActiveSite activeSite = site as ActiveSite;
if (activeSite == null)
continue;
byte mapCode = pixel.Band0;
ICommunity community = communities.Find(mapCode);
if (community == null) {
throw Util.Raster.PixelException(activeSite.Location,
"Unknown map code for initial community: {0}",
mapCode);
}
InitializeSite(activeSite, community);
}
}
}
//---------------------------------------------------------------------
public void InitializeSites(string initialCommunities,
string initialCommunitiesMap)
{
Log.Info("Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser();
InitialCommunities.IDataset communities = Data.Load <InitialCommunities.IDataset>(initialCommunities, parser);
Log.Info("Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster <InitialCommunities.Pixel> map;
map = Util.Raster.Open <InitialCommunities.Pixel>(initialCommunitiesMap);
using (map) {
foreach (Site site in Model.Landscape.AllSites)
{
InitialCommunities.Pixel pixel = map.ReadPixel();
ActiveSite activeSite = site as ActiveSite;
if (activeSite == null)
{
continue;
}
byte mapCode = pixel.Band0;
ICommunity community = communities.Find(mapCode);
if (community == null)
{
throw Util.Raster.PixelException(activeSite.Location,
"Unknown map code for initial community: {0}",
mapCode);
}
InitializeSite(activeSite, community);
}
}
}
//---------------------------------------------------------------------
public override void InitializeSites(string initialCommunities,
string initialCommunitiesMap)
{
UI.WriteLine("Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser(Timestep, Model.Core.Species);
communities = Data.Load <InitialCommunities.IDataset>(initialCommunities, parser);
UI.WriteLine("Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster <InitialCommunities.Pixel> map;
map = Model.Core.OpenRaster <InitialCommunities.Pixel>(initialCommunitiesMap);
InputMap.ReadWithMajorityRule(map, Model.Core.Landscape, InitializeSite);
base.Cohorts = Model.Core.SuccessionCohorts;
}
//---------------------------------------------------------------------
public override void InitializeSites(string initialCommunities,
string initialCommunitiesMap,
ICore modelCore)
{
Model.Core.UI.WriteLine(" Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser(Timestep, Model.Core.Species);
InitialCommunities.IDataset communities = Landis.Data.Load <InitialCommunities.IDataset>(initialCommunities, parser);
Model.Core.UI.WriteLine(" Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster <uintPixel> map;
map = Model.Core.OpenRaster <uintPixel>(initialCommunitiesMap);
using (map)
{
uintPixel pixel = map.BufferPixel;
foreach (Site site in Model.Core.Landscape.AllSites)
{
map.ReadBufferPixel();
uint mapCode = pixel.MapCode.Value;
if (!site.IsActive)
{
continue;
}
//if (!modelCore.Ecoregion[site].Active)
// continue;
//modelCore.Log.WriteLine("ecoregion = {0}.", modelCore.Ecoregion[site]);
ActiveSite activeSite = (ActiveSite)site;
ICommunity community = communities.Find(mapCode);
if (community == null)
{
throw new ApplicationException(string.Format("Unknown map code for initial community: {0}", mapCode));
}
InitializeSite(activeSite, community);
}
}
}
//---------------------------------------------------------------------
public override void InitializeSites(string initialCommunities,
string initialCommunitiesMap)
{
UI.WriteLine("Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser(Timestep, Model.Core.Species);
InitialCommunities.IDataset communities = Data.Load<InitialCommunities.IDataset>(initialCommunities, parser);
UI.WriteLine("Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster<InitialCommunities.Pixel> map;
map = Model.Core.OpenRaster<InitialCommunities.Pixel>(initialCommunitiesMap);
using (map) {
foreach (Site site in Model.Core.Landscape.AllSites) {
InitialCommunities.Pixel pixel = map.ReadPixel();
ActiveSite activeSite = site as ActiveSite;
if (activeSite == null)
continue;
ushort mapCode = pixel.Band0;
ICommunity community = communities.Find(mapCode);
if (community == null) {
throw new PixelException(activeSite.Location,
"Unknown map code for initial community: {0}",
mapCode);
}
InitializeSite(activeSite, community);
}
}
base.Cohorts = Model.Core.SuccessionCohorts;
}
//---------------------------------------------------------------------
public override void InitializeSites(string initialCommunities,
string initialCommunitiesMap,
ICore modelCore)
{
Model.Core.UI.WriteLine(" Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser(Timestep, Model.Core.Species);
InitialCommunities.IDataset communities = Landis.Data.Load<InitialCommunities.IDataset>(initialCommunities, parser);
Model.Core.UI.WriteLine(" Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster<uintPixel> map;
map = Model.Core.OpenRaster<uintPixel>(initialCommunitiesMap);
using (map)
{
uintPixel pixel = map.BufferPixel;
foreach (Site site in Model.Core.Landscape.AllSites)
{
map.ReadBufferPixel();
uint mapCode = pixel.MapCode.Value;
if (!site.IsActive)
continue;
//if (!modelCore.Ecoregion[site].Active)
// continue;
//modelCore.Log.WriteLine("ecoregion = {0}.", modelCore.Ecoregion[site]);
ActiveSite activeSite = (ActiveSite) site;
ICommunity community = communities.Find(mapCode);
if (community == null)
{
throw new ApplicationException(string.Format("Unknown map code for initial community: {0}", mapCode));
}
InitializeSite(activeSite, community);
}
}
}
//---------------------------------------------------------------------
public override void InitializeSites(string initialCommunities,
string initialCommunitiesMap)
{
UI.WriteLine("Loading initial communities from file \"{0}\" ...", initialCommunities);
InitialCommunities.DatasetParser parser = new InitialCommunities.DatasetParser(Timestep, Model.Core.Species);
communities = Data.Load<InitialCommunities.IDataset>(initialCommunities, parser);
UI.WriteLine("Reading initial communities map \"{0}\" ...", initialCommunitiesMap);
IInputRaster<InitialCommunities.Pixel> map;
map = Model.Core.OpenRaster<InitialCommunities.Pixel>(initialCommunitiesMap);
InputMap.ReadWithMajorityRule(map, Model.Core.Landscape, InitializeSite);
base.Cohorts = Model.Core.SuccessionCohorts;
}
