public IndividualTransporterDTO MapFrom(IndividualTransporter transporter, ISimulationSubject simulationSubject)
{
var dto = new IndividualTransporterDTO(transporter);
UpdateExpressionParameters(dto, simulationSubject);
return(dto);
}
public void UpdateExpressionParameters(IndividualTransporterDTO individualTransporterDTO, ISimulationSubject simulationSubject)
{
var transporter = individualTransporterDTO.Transporter;
individualTransporterDTO.ClearExpressionParameters();
//Local parameters
foreach (var transporterExpressionContainer in simulationSubject.AllMoleculeContainersFor <TransporterExpressionContainer>(transporter))
{
var organ = transporterExpressionContainer.LogicalContainer;
var isInOrganWithLumenOrBrain = organ.IsOrganWithLumen() || organ.IsBrain();
foreach (var parameter in transporterExpressionContainer.AllParameters())
{
var expressionParameterDTO = _expressionParameterMapper.MapFrom(parameter);
expressionParameterDTO.TransporterExpressionContainer = transporterExpressionContainer;
expressionParameterDTO.IsInOrganWithLumenOrBrain = isInOrganWithLumenOrBrain;
var direction = retrieveTransporterDirectionFor(transporterExpressionContainer, parameter, isInOrganWithLumenOrBrain);
expressionParameterDTO.TransportDirection = _transportDirectionRepository.ById(direction);
individualTransporterDTO.AddExpressionParameter(expressionParameterDTO);
}
}
//Global parameters;
foreach (var parameter in transporter.AllGlobalExpressionParameters)
{
var expressionParameter = _expressionParameterMapper.MapFrom(parameter);
expressionParameter.TransporterExpressionContainer = parameter.IsNamed(REL_EXP_BLOOD_CELLS)
? transporter.BloodCellsContainer
: transporter.VascularEndotheliumContainer;
var direction = expressionParameter.TransporterExpressionContainer.TransportDirection;
expressionParameter.TransportDirection = _transportDirectionRepository.ById(direction);
individualTransporterDTO.AddExpressionParameter(expressionParameter);
}
var hasTemplateForSpecies = _transporterContainerTemplateRepository.HasTransporterTemplateFor(simulationSubject.Species.Name, transporter.Name);
individualTransporterDTO.DefaultAvailableInDatabase = hasTemplateForSpecies;
}
protected override void Context()
{
_view = A.Fake <IIndividualTransporterExpressionsView>();
_parameterTask = A.Fake <IEditParameterPresenterTask>();
_moleculeExpressionTask = A.Fake <IMoleculeExpressionTask <Individual> >();
_transporterMapper = A.Fake <IIndividualTransporterToTransporterExpressionDTOMapper>();
_moleculePropertiesPresenter = A.Fake <IIndividualMoleculePropertiesPresenter <Individual> >();
_transporterExpressionParametersPresenter = A.Fake <ITransporterExpressionParametersPresenter>();
sut = new IndividualTransporterExpressionsPresenter <Individual>(
_view, _parameterTask, _moleculeExpressionTask, _transporterMapper, _moleculePropertiesPresenter,
_transporterExpressionParametersPresenter);
_commandCollector = new PKSimMacroCommand();
sut.InitializeWith(_commandCollector);
_transporter = new IndividualTransporter();
_simulationSubject = new Individual();
_transporterDTO = new IndividualTransporterDTO(_transporter);
sut.SimulationSubject = _simulationSubject;
A.CallTo(() => _transporterMapper.MapFrom(_transporter, _simulationSubject)).Returns(_transporterDTO);
}
public void BindTo(IndividualTransporterDTO transporterExpressionDTO)
{
_screenBinder.BindToSource(transporterExpressionDTO);
}
protected override void Because()
{
_dto = sut.MapFrom(_transporter, _simulationSubject);
}
