protected override void Context()
{
_speciesRepository = A.Fake <ISpeciesRepository>();
_usedMoleculeRepository = A.Fake <IUsedMoleculeRepository>();
_projectRetriever = A.Fake <IPKSimProjectRetriever>();
_moleculePropertiesMapper = A.Fake <IMoleculePropertiesMapper>();
_usedExpressionProfileCategoryRepository = A.Fake <IUsedExpressionProfileCategoryRepository>();
sut = new ExpressionProfileToExpressionProfileDTOMapper(
_speciesRepository,
_usedMoleculeRepository,
_projectRetriever,
_moleculePropertiesMapper,
_usedExpressionProfileCategoryRepository);
A.CallTo(() => _usedMoleculeRepository.All()).Returns(new[] { "A", "B" });
A.CallTo(() => _usedExpressionProfileCategoryRepository.All()).Returns(new[] { "CatA", "CatB" });
A.CallTo(() => _speciesRepository.All()).Returns(new[] { new Species {
Name = "Human"
}, new Species {
Name = "Rat"
} });
_expressionProfile1 = DomainHelperForSpecs.CreateExpressionProfile <IndividualEnzyme>("DOG", "CYP3A4", "Sick");
A.CallTo(() => _projectRetriever.Current.All <ExpressionProfile>()).Returns(new[] { _expressionProfile1 });
}
protected CreatePartialProcessPresenter(TView view,
ICompoundProcessTask compoundProcessTask,
IPartialProcessToPartialProcessDTOMapper partialProcessMapper,
IParametersByGroupPresenter parameterEditPresenter,
ICompoundProcessToCompoundProcessDTOMapper processMapper,
IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, parameterEditPresenter, processMapper, compoundProcessTask, speciesRepository)
{
_partialProcessMapper = partialProcessMapper;
_view.AllAvailableProteins = usedMoleculeRepository.All();
DefaultMoleculeName = string.Empty;
}
public ExpressionProfileToExpressionProfileDTOMapper(
ISpeciesRepository speciesRepository,
IUsedMoleculeRepository usedMoleculeRepository,
IPKSimProjectRetriever projectRetriever,
IMoleculePropertiesMapper moleculePropertiesMapper,
IUsedExpressionProfileCategoryRepository usedExpressionProfileCategoryRepository)
{
_speciesRepository = speciesRepository;
_usedMoleculeRepository = usedMoleculeRepository;
_projectRetriever = projectRetriever;
_moleculePropertiesMapper = moleculePropertiesMapper;
_usedExpressionProfileCategoryRepository = usedExpressionProfileCategoryRepository;
}
protected override void Context()
{
base.Context();
_view = A.Fake <ICreateEnzymaticProcessView>();
_compoundProcessTask = A.Fake <ICompoundProcessTask>();
_buildingBlockRepository = A.Fake <IBuildingBlockRepository>();
_processMapper = A.Fake <ICompoundProcessToCompoundProcessDTOMapper>();
_partialProcessMapper = A.Fake <IPartialProcessToPartialProcessDTOMapper>();
_parameterPresenter = A.Fake <IParametersByGroupPresenter>();
_usedMOleculeRepository = A.Fake <IUsedMoleculeRepository>();
_speciesRepository = A.Fake <ISpeciesRepository>();
sut = new CreateEnzymaticProcessPresenter(_view, _compoundProcessTask, _processMapper, _partialProcessMapper, _parameterPresenter, _usedMOleculeRepository, _speciesRepository, _buildingBlockRepository);
}
public CreateEnzymaticProcessPresenter(
ICreateEnzymaticProcessView view,
ICompoundProcessTask compoundProcessTask,
ICompoundProcessToCompoundProcessDTOMapper processMapper,
IPartialProcessToPartialProcessDTOMapper partialProcessMapper,
IParametersByGroupPresenter parameterEditPresenter,
IUsedMoleculeRepository usedMoleculeRepository,
ISpeciesRepository speciesRepository,
IBuildingBlockRepository buildingBlockRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.SetIcon(ApplicationIcons.Metabolite);
view.Caption = PKSimConstants.UI.CreateMetabolizingEnzyme;
view.MoleculeCaption = PKSimConstants.UI.MetabolizingEnzyme;
_buildingBlockRepository = buildingBlockRepository;
}
public CreateTransportPartialProcessPresenter(ICreatePartialProcessView view, ICompoundProcessTask compoundProcessTask, ICompoundProcessToCompoundProcessDTOMapper processMapper, IPartialProcessToPartialProcessDTOMapper partialProcessMapper, IParametersByGroupPresenter parameterEditPresenter, IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.SetIcon(ApplicationIcons.Transporter);
view.MoleculeCaption = PKSimConstants.UI.TransportProteins;
view.Caption = PKSimConstants.UI.CreateTransportProtein;
}
public CreateInhibitionProcessPresenter(ICreatePartialProcessView view, ICompoundProcessTask compoundProcessTask, IPartialProcessToPartialProcessDTOMapper partialProcessMapper, IParametersByGroupPresenter parameterEditPresenter, ICompoundProcessToCompoundProcessDTOMapper processMapper, IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository) : base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.ApplicationIcon = ApplicationIcons.Inhibition;
view.MoleculeCaption = PKSimConstants.UI.AffectedEnzymeOrTransporter;
view.Caption = PKSimConstants.UI.Inhibition;
}
public CreateSpecificBindingPartialProcessPresenter(ICreatePartialProcessView view, ICompoundProcessTask compoundProcessTask, ICompoundProcessToCompoundProcessDTOMapper processMapper, IPartialProcessToPartialProcessDTOMapper partialProcessMapper, IParametersByGroupPresenter parameterEditPresenter, IUsedMoleculeRepository usedMoleculeRepository, ISpeciesRepository speciesRepository)
: base(view, compoundProcessTask, partialProcessMapper, parameterEditPresenter, processMapper, usedMoleculeRepository, speciesRepository)
{
view.ApplicationIcon = ApplicationIcons.SpecificBinding;
view.MoleculeCaption = PKSimConstants.UI.ProteinBindingPartner;
view.Caption = PKSimConstants.UI.CreateProteinBindingPartner;
}
public SimpleMoleculePresenter(ISimpleMoleculeView view, IObjectTypeResolver objectTypeResolver, IUsedMoleculeRepository usedMoleculeRepository)
: base(view, false)
{
_objectTypeResolver = objectTypeResolver;
view.AvailableProteins = usedMoleculeRepository.All();
}
