public void AddCustomAnnotation(ISupplementaryAnnotationPosition sa)
{
// sanity check: SVs don't use supplementary annotations for now
if (IsStructuralVariant)
{
return;
}
sa.SetIsAlleleSpecific(SuppAltAllele);
if (SupplementaryAnnotationPosition == null)
{
SupplementaryAnnotationPosition = sa;
return;
}
if (SupplementaryAnnotationPosition.CustomItems != null)
{
SupplementaryAnnotationPosition.CustomItems.AddRange(sa.CustomItems);
}
else
{
SupplementaryAnnotationPosition.CustomItems = sa.CustomItems;
}
}
/// <summary>
/// sets the supplementary annotation allele
/// </summary>
public void SetSupplementaryAnnotation(ISupplementaryAnnotationPosition sa)
{
// sanity check: SVs don't use supplementary annotations for now
if (IsStructuralVariant)
{
return;
}
sa.SetIsAlleleSpecific(SuppAltAllele);
SupplementaryAnnotationPosition = sa;
}