/// <summary>Informs this sequence model that the value of the whole sequence is initialized to sequence</summary>
public virtual void SetInitialSequence(int[] sequence)
{
if (models != null)
{
foreach (ISequenceListener model in models)
{
model.SetInitialSequence(sequence);
}
return;
}
model1.SetInitialSequence(sequence);
model2.SetInitialSequence(sequence);
}
public virtual int[] FindBestUsingAnnealing(ISequenceModel model, CoolingSchedule schedule, int[] initialSequence)
{
if (verbose > 0)
{
log.Info("Doing annealing");
}
listener.SetInitialSequence(initialSequence);
IList result = new ArrayList();
// so we don't change the initial, or the one we just stored
int[] sequence = Copy(initialSequence);
int[] best = null;
double bestScore = double.NegativeInfinity;
double score = double.NegativeInfinity;
// if (!returnLastFoundSequence) {
// score = model.scoreOf(sequence);
// }
ICollection <int> positionsChanged = null;
if (speedUpThreshold > 0)
{
positionsChanged = Generics.NewHashSet();
}
for (int i = 0; i < schedule.NumIterations(); i++)
{
if (Thread.Interrupted())
{
// Allow interrupting the parser
throw new RuntimeInterruptedException();
}
double temperature = schedule.GetTemperature(i);
if (speedUpThreshold <= 0)
{
score = SampleSequenceForward(model, sequence, temperature, null);
}
else
{
// modifies tagSequence
if (i < speedUpThreshold)
{
score = SampleSequenceForward(model, sequence, temperature, null);
// modifies tagSequence
for (int j = 0; j < sequence.Length; j++)
{
if (sequence[j] != initialSequence[j])
{
positionsChanged.Add(j);
}
}
}
else
{
score = SampleSequenceForward(model, sequence, temperature, positionsChanged);
}
}
// modifies tagSequence
result.Add(sequence);
if (returnLastFoundSequence)
{
best = sequence;
}
else
{
// score = model.scoreOf(sequence);
//log.info(i+" "+score+" "+Arrays.toString(sequence));
if (score > bestScore)
{
best = sequence;
bestScore = score;
}
}
if (i % 50 == 0)
{
if (verbose > 1)
{
log.Info("itr " + i + ": " + bestScore + "\t");
}
}
if (verbose > 0)
{
log.Info(".");
}
}
if (verbose > 1)
{
log.Info();
PrintSamples(result, System.Console.Error);
}
if (verbose > 0)
{
log.Info("done.");
}
//return sequence;
return(best);
}