public void SetUp()
{
_loader = TestInitializer.ServiceProvider.GetService <IPatientLoader>();
_extractor = TestInitializer.ServiceProvider.GetService <IPatientSourceExtractor>();
_extract = _extracts.First(x => x.Name.IsSameAs(nameof(PatientExtract)));
_count = _extractor.Extract(_extract, _protocol).Result;
}
public void should_Extract(string name)
{
Assert.False(_extractsContext.TempPatientExtracts.Any());
var extract = _extracts.First(x => x.Name.IsSameAs(name));
var count = _extractor.Extract(extract, _protocol).Result;
Assert.True(count > 0);
_extractsContext = TestInitializer.ServiceProvider.GetService <ExtractsContext>();
Assert.AreEqual(count, _extractsContext.TempPatientExtracts.Count());
Log.Debug($"extracted {_extractsContext.TempPatientExtracts.Count()}");
}
public async Task <bool> Handle(ExtractPatient request, CancellationToken cancellationToken)
{
//Extract
int found = await _patientSourceExtractor.Extract(request.Extract, request.DatabaseProtocol);
//Check for duplicate patients
var patientKeys = _tempPatientExtractRepository.GetAll().Select(k => k.PatientPK);
var distinct = new HashSet <int?>();
var duplicates = new HashSet <int?>();
foreach (var key in patientKeys)
{
if (!distinct.Add(key))
{
duplicates.Add(key);
}
}
if (duplicates.Any())
{
var readDuplicates = string.Join(", ", duplicates.ToArray());
throw new DuplicatePatientException($"Duplicate patient(s) with PatientPK(s) {readDuplicates} found");
}
//Validate
await _extractValidator.Validate(request.Extract.Id, found, nameof(PatientExtract), $"{nameof(TempPatientExtract)}s");
//Load
int loaded = await _patientLoader.Load(request.Extract.Id, found, request.DatabaseProtocol.SupportsDifferential);
int rejected =
_extractHistoryRepository.ProcessRejected(request.Extract.Id, found - loaded, request.Extract);
// _extractHistoryRepository.ProcessExcluded(request.Extract.Id, rejected,0);
_extractHistoryRepository.ProcessExcluded(request.Extract.Id, rejected, request.Extract);
//notify loaded
DomainEvents.Dispatch(
new ExtractActivityNotification(request.Extract.Id, new DwhProgress(
nameof(PatientExtract),
nameof(ExtractStatus.Loaded),
found, loaded, rejected, loaded, 0)));
return(true);
}
public async Task <bool> Handle(ExtractPatient request, CancellationToken cancellationToken)
{
//Extract
int found = await _patientSourceExtractor.Extract(request.Extract, request.DatabaseProtocol);
//Validate
await _extractValidator.Validate(request.Extract.Id, found, nameof(PatientExtract), $"{nameof(TempPatientExtract)}s");
//Load
int loaded = await _patientLoader.Load(request.Extract.Id, found);
int rejected = found - loaded;
//notify loaded
DomainEvents.Dispatch(
new ExtractActivityNotification(request.Extract.Id, new DwhProgress(
nameof(PatientExtract),
nameof(ExtractStatus.Loaded),
found, loaded, rejected, loaded, 0)));
return(true);
}