protected CreateProcessPresenter(TView view, IParametersByGroupPresenter parametersPresenter, ICompoundProcessToCompoundProcessDTOMapper processMapper,
ICompoundProcessTask compoundProcessTask, ISpeciesRepository speciesRepository)
: base(view)
{
_parametersPresenter = parametersPresenter;
_processMapper = processMapper;
_compoundProcessTask = compoundProcessTask;
_speciesRepository = speciesRepository;
_view.AddParametersView(_parametersPresenter.View);
_editCommands = new PKSimMacroCommand();
}
protected override void Because()
{
_resultOfScaleIndividual = sut.ScaleIndividual(_sourceIndividual) as IPKSimMacroCommand;
}
protected override void Because()
{
_resultOfCreateIndividual = sut.Create() as IPKSimMacroCommand;
}
private ICommand synchronizeBuildingBlocks(IPKSimBuildingBlock templateBuildingBlock, IPKSimMacroCommand updateTemplateParametersCommand)
{
var simulationSubject = templateBuildingBlock as ISimulationSubject;
//For now, deal with update from Individual or Population into Expression Profile
if (simulationSubject == null)
{
return(new PKSimEmptyCommand());
}
var allExpressionProfileParameterValueCommand = updateTemplateParametersCommand.All()
.OfType <SetExpressionProfileValueCommand>()
.ToList();
if (!allExpressionProfileParameterValueCommand.Any())
{
return(new PKSimEmptyCommand());
}
var expressionProfilesToUpdate = new HashSet <ExpressionProfile>();
var macroCommand = new PKSimMacroCommand();
//We have some commands related to expression profile. We need to update the expression profile
foreach (var parameterCommand in allExpressionProfileParameterValueCommand)
{
var simulationSubjectParameter = _executionContext.Get <IParameter>(parameterCommand.ParameterId);
if (simulationSubjectParameter == null)
{
continue;
}
//This should be the id of the parameter in the expression profile
var expressionProfileParameterId = simulationSubjectParameter.Origin.ParameterId;
var expressionProfileParameter = _executionContext.Get <IParameter>(expressionProfileParameterId);
if (expressionProfileParameter == null)
{
continue;
}
var expressionProfile = _executionContext.BuildingBlockContaining(expressionProfileParameter) as ExpressionProfile;
if (expressionProfile == null)
{
continue;
}
expressionProfilesToUpdate.Add(expressionProfile);
//We do not update the simulation subject. It will be done at the end of the loop
var command = new SetExpressionProfileValueCommand(expressionProfileParameter, simulationSubjectParameter.Value, updateSimulationSubjects: false);
macroCommand.Add(command);
}
macroCommand.Run(_executionContext);
_executionContext.UpdateBuildingBlockPropertiesInCommand(macroCommand, templateBuildingBlock);
//Now that our expression profile are updated, we need to trigger the synchronization in all building blocks
expressionProfilesToUpdate.Each(x => _expressionProfileUpdater.SynchronizeAllSimulationSubjectsWithExpressionProfile(x));
return(macroCommand);
}
