protected override void Context()
{
base.Context();
_newAlias = "new_Name";
_changedObject.Name = "Name really old";
_changedName = _changedObject.Name;
_oldAlias = "Name_really_old";
_theFormula = new ExplicitFormula(String.Format("k_{0}*{0}", _oldAlias));
_formulaUsablePathNotToChange = new FormulaUsablePath(new[] { ObjectPath.PARENT_CONTAINER, "BLA", String.Format("k_{0}", _oldAlias) })
{
Alias = String.Format("k_{0}", _oldAlias)
};
_theFormula.AddObjectPath(_formulaUsablePathNotToChange);
_formulaUsablePathToChange = new FormulaUsablePath(new[] { ObjectPath.PARENT_CONTAINER, _changedName })
{
Alias = _oldAlias
};
_theFormula.AddObjectPath(_formulaUsablePathToChange);
_theFormula.Name = "F1";
A.CallTo(() => _aliasCreator.CreateAliasFrom(_changedName)).Returns(_oldAlias);
A.CallTo(() => _aliasCreator.CreateAliasFrom(_newName)).Returns(_newAlias);
A.CallTo(() => _context.Get <IObjectBase>(A <string> ._)).Returns(_theFormula);
_moleculeBuildingBlock = new MoleculeBuildingBlock().WithName("M").WithId("M");
_moleculeBuildingBlock.AddFormula(_theFormula);
}
protected override void Context()
{
base.Context();
_returnedBuildingBlocks = new List <IBuildingBlock>();
_childReactionBuilder = new ReactionBuilder().WithName("Test").WithId("FindME");
_reactionParameter = new Parameter().WithName("Para").WithId("ReactionPara");
_childReactionBuilder.AddParameter(_reactionParameter);
_reactionBuildingBlock = new MoBiReactionBuildingBlock()
{
_childReactionBuilder
};
_allBuildingBlocks.Add(_reactionBuildingBlock);
_moleculeBuilder = new MoleculeBuilder();
_moleculeParameter = new Parameter().WithName("para");
_moleculeBuilder.AddParameter(_moleculeParameter);
_moleculeBuildingBlock = new MoleculeBuildingBlock()
{
_moleculeBuilder
};
_allBuildingBlocks.Add(_moleculeBuildingBlock);
_passiveTranportBuilder = new TransportBuilder();
_passiveTransportParameter = new Parameter().WithName("PTParameter");
_passiveTranportBuilder.AddParameter(_passiveTransportParameter);
_passiveTranportBuildingBlock = new PassiveTransportBuildingBlock()
{
_passiveTranportBuilder
};
_allBuildingBlocks.Add(_passiveTranportBuildingBlock);
_applicationBuilder = new ApplicationBuilder();
_eventGroupBuildingBlock = new EventGroupBuildingBlock()
{
_applicationBuilder
};
_applicationBuilderParameter = new ApplicationBuilder().WithName("AppParameter");
_applicationBuilder.Add(_applicationBuilderParameter);
_allBuildingBlocks.Add(_eventGroupBuildingBlock);
_parameter = new Parameter().WithName("Para");
var container = new Container().WithName("Cont");
container.Add(_parameter);
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_parameterFactory = A.Fake <IParameterFactory>();
A.CallTo(() => _objectBaseFactory.Create <IContainer>()).Returns(new Container());
A.CallTo(() => _objectBaseFactory.Create <IMoBiSpatialStructure>()).Returns(new MoBiSpatialStructure());
var diagramManagerFactory = A.Fake <IDiagramManagerFactory>();
_spatialStructure = new MoBiSpatialStructureFactory(_objectBaseFactory, _parameterFactory, A.Fake <IIconRepository>(), diagramManagerFactory).Create() as IMoBiSpatialStructure;
_spatialStructure.AddTopContainer(container);
_allBuildingBlocks.Add(_spatialStructure);
_formula = new ExplicitFormula();
_moleculeBuildingBlock.AddFormula(_formula);
}
public void Visit(IMoleculeBuildingBlock moleculeBuildingBlock)
{
var amountDimension = _context.DimensionFactory.Dimension(Constants.Dimension.AMOUNT);
var formula = createTotalDrugMassFormula(amountDimension);
foreach (var moleculeBuilder in moleculeBuildingBlock)
{
moleculeBuilder.Add(
createTotalDrugMassParameter(formula, amountDimension));
}
updateAllParameters(moleculeBuildingBlock.SelectMany(mb => mb.GetAllChildren <IParameter>()));
moleculeBuildingBlock.AddFormula(formula);
_converted = true;
}
protected override void Context()
{
base.Context();
_formula = new ExplicitFormula();
_formula.Name = _changedName;
_path = new FormulaUsablePath(new[] { "A", "B", _changedName })
{
Alias = _changedName
};
A.CallTo(() => _aliasCreator.CreateAliasFrom(_changedName)).Returns(_changedName);
A.CallTo(() => _aliasCreator.CreateAliasFrom(_newName)).Returns(_newName);
_formula.AddObjectPath(_path);
_moleculeBuildingBlock = new MoleculeBuildingBlock().WithName("M").WithId("M");
_moleculeBuildingBlock.AddFormula(_formula);
}
protected override void Context()
{
base.Context();
_returnedBuildingBlocks = new List <IBuildingBlock>();
_childReactionBuilder = new ReactionBuilder().WithName("Test").WithId("FindME");
_reactionBuildingBlock = new MoBiReactionBuildingBlock()
{
_childReactionBuilder
};
_allBuildingBlocks.Add(_reactionBuildingBlock);
_moleculeBuilder = new MoleculeBuilder();
_moleculeBuildingBlock = new MoleculeBuildingBlock()
{
_moleculeBuilder
};
_allBuildingBlocks.Add(_moleculeBuildingBlock);
_obseverBuilder = new ObserverBuilder();
_observerBuildingBlock = new ObserverBuildingBlock()
{
_obseverBuilder
};
_allBuildingBlocks.Add(_observerBuildingBlock);
_passiveTranportBuilder = new TransportBuilder();
_passiveTranportBuildingBlock = new PassiveTransportBuildingBlock()
{
_passiveTranportBuilder
};
_allBuildingBlocks.Add(_passiveTranportBuildingBlock);
_applicationBuilder = new ApplicationBuilder();
_eventGroupBuildingBlock = new EventGroupBuildingBlock()
{
_applicationBuilder
};
_allBuildingBlocks.Add(_eventGroupBuildingBlock);
_parameter = new Parameter().WithName("Para");
var container = new Container().WithName("Cont");
container.Add(_parameter);
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_parmaeterFactory = A.Fake <IParameterFactory>();
A.CallTo(() => _objectBaseFactory.Create <IContainer>()).Returns(A.Fake <IContainer>());
A.CallTo(() => _objectBaseFactory.Create <IMoBiSpatialStructure>()).Returns(new MoBiSpatialStructure());
var diagramManagerFactory = A.Fake <IDiagramManagerFactory>();
_spatialStructure = new MoBiSpatialStructureFactory(_objectBaseFactory, _parmaeterFactory, A.Fake <IconRepository>(), diagramManagerFactory).Create().DowncastTo <IMoBiSpatialStructure>();
_spatialStructure.AddTopContainer(container);
_allBuildingBlocks.Add(_spatialStructure);
_formula = new ExplicitFormula();
_moleculeBuildingBlock.AddFormula(_formula);
_parameterStartValue = new ParameterStartValue {
Path = new ObjectPath {
"test"
}, StartValue = 1, Dimension = A.Fake <IDimension>()
};
_parameterStartValueBuildingBlock = new ParameterStartValuesBuildingBlock()
{
_parameterStartValue
};
_allBuildingBlocks.Add(_parameterStartValueBuildingBlock);
_moleculeStartValue = new MoleculeStartValue {
ContainerPath = new ObjectPath {
"test"
}, Name = "drug"
};
_moleculeStartValuesBuildingBlock = new MoleculeStartValuesBuildingBlock()
{
_moleculeStartValue
};
_allBuildingBlocks.Add(_moleculeStartValuesBuildingBlock);
}