protected override void Context()
{
base.Context();
_project = new MoBiProject();
var molecule = new MoleculeBuilder().WithName(_moleculeName);
var moleculeParameter = new Parameter().WithName(_moleculeParameterName);
molecule.Add(moleculeParameter);
var molecules = new MoleculeBuildingBlock()
{
molecule
};
_project.AddBuildingBlock(molecules);
var parameter = new Parameter().WithName(_parameterName);
var root = new Container().WithName("Root");
root.Add(parameter);
var spatialStructure = new MoBiSpatialStructure().WithTopContainer(root);
_project.AddBuildingBlock(spatialStructure);
var reactionBuilder = new ReactionBuilder().WithName(_reactionName);
var reactions = new MoBiReactionBuildingBlock()
{
reactionBuilder
};
_project.AddBuildingBlock(reactions);
A.CallTo(() => _context.CurrentProject).Returns(_project);
}
private void addEntityToProject(EntityMetaData entity, SerializationContext serializationContext)
{
if (entity.IsAnImplementationOf <SimulationMetaData>())
{
return;
}
var deserializedEntity = deserializeContent <object>(entity.Content, serializationContext);
if (deserializedEntity.IsAnImplementationOf <CurveChart>())
{
addChartToProject(deserializedEntity);
}
else if (deserializedEntity.IsAnImplementationOf <ParameterIdentification>())
{
_project.AddParameterIdentification(deserializedEntity as ParameterIdentification);
}
else if (deserializedEntity.IsAnImplementationOf <SensitivityAnalysis>())
{
_project.AddSensitivityAnalysis(deserializedEntity as SensitivityAnalysis);
}
else if (deserializedEntity.IsAnImplementationOf <IWithId>())
{
_project.AddBuildingBlock(deserializedEntity as IBuildingBlock);
}
else
{
throw new MoBiException($"Don't know what to do with {deserializedEntity.GetType()}");
}
}
protected override void Context()
{
base.Context();
_project = new MoBiProject();
var molecule = new MoleculeBuilder().WithName(_moleculeName);
var moleculeParameter = new Parameter().WithName(_moleculeParameterName);
molecule.Add(moleculeParameter);
var molecules = new MoleculeBuildingBlock()
{
molecule
};
_project.AddBuildingBlock(molecules);
var parameter = new Parameter().WithName(_parameterName);
var root = new Container().WithName(_topContainerName);
root.Add(parameter);
var spatialStructure = new MoBiSpatialStructure().WithTopContainer(root);
spatialStructure.GlobalMoleculeDependentProperties = new Container().WithName(Constants.MOLECULE_PROPERTIES);
spatialStructure.NeighborhoodsContainer = new Container().WithName(Constants.NEIGHBORHOODS);
_project.AddBuildingBlock(spatialStructure);
var reactionBuilder = new ReactionBuilder().WithName(_reactionName);
var reactions = new MoBiReactionBuildingBlock()
{
reactionBuilder
};
_project.AddBuildingBlock(reactions);
_project.AddSimulation(new MoBiSimulation().WithName(_simulationName));
var eventGroupBuilder = new EventGroupBuilder().WithName(_eventGroupName);
var eventGroupBuildingBlock = new EventGroupBuildingBlock();
eventGroupBuildingBlock.Add(eventGroupBuilder);
_project.AddBuildingBlock(eventGroupBuildingBlock);
A.CallTo(() => _context.CurrentProject).Returns(_project);
}
protected override void Context()
{
base.Context();
_project = new MoBiProject();
_observerBuildingBlock = new ObserverBuildingBlock().WithName("OBSERVERS");
_simulationSettingsBuildingBlock = new SimulationSettings().WithName("SIMULATION_SETTINGS");
_simulationSettingsNode = A.Fake <ITreeNode>();
_observerBuildingBlockNode = A.Fake <ITreeNode>();
_allNodesAdded = new List <ITreeNode>();
A.CallTo(() => _view.AddNode(A <ITreeNode> ._)).Invokes(x =>
{
_allNodesAdded.Add(x.GetArgument <ITreeNode>(0));
});
_project.AddBuildingBlock(_observerBuildingBlock);
_project.AddBuildingBlock(_simulationSettingsBuildingBlock);
A.CallTo(() => _treeNodeFactory.CreateFor(_simulationSettingsBuildingBlock)).Returns(_simulationSettingsNode);
A.CallTo(() => _treeNodeFactory.CreateFor(_observerBuildingBlock)).Returns(_observerBuildingBlockNode);
}
protected override void Context()
{
base.Context();
_moleculeBuildingBlock = new MoleculeBuildingBlock {
Id = "1"
};
_project = new MoBiProject();
_project.AddBuildingBlock(new MoleculeStartValuesBuildingBlock {
MoleculeBuildingBlockId = _moleculeBuildingBlock.Id, SpatialStructureId = ""
});
}
private void addSimulationSettingsTemplateToProject(IMoBiSimulation mobiSimulation)
{
if (!_loadingMoBiSimulation)
{
return;
}
var simulationSettingsInfo = mobiSimulation.MoBiBuildConfiguration.SimulationSettingsInfo;
var templateSimulationSettings = _cloneManager.CloneBuidingBlock(simulationSettingsInfo.BuildingBlock);
simulationSettingsInfo.TemplateBuildingBlock = templateSimulationSettings;
_project.AddBuildingBlock(templateSimulationSettings);
}
private void addjEmptyBBIfneeded(IMoBiProject project)
{
project.AddBuildingBlock(new ObserverBuildingBlock().WithName("Empty"));
if (!project.EventBlockCollection.Any())
{
project.AddBuildingBlock(new EventGroupBuildingBlock().WithName("Empty"));
}
if (!project.ReactionBlockCollection.Any())
{
project.AddBuildingBlock(new MoBiReactionBuildingBlock().WithName("Empty"));
}
if (!project.PassiveTransportCollection.Any())
{
project.AddBuildingBlock(new PassiveTransportBuildingBlock().WithName("Empty"));
}
if (!project.MoleculeStartValueBlockCollection.Any())
{
project.AddBuildingBlock(new MoleculeStartValuesBuildingBlock().WithName("Empty"));
}
if (!project.ParametersStartValueBlockCollection.Any())
{
project.AddBuildingBlock(new ParameterStartValuesBuildingBlock().WithName("Empty"));
}
}
private void addToProject(IMoBiProject project)
{
project.AddBuildingBlock(_buildingBlock);
}
private void addSettings(IMoBiProject project, string settingFileName)
{
var simulationSettings = IoC.Resolve <ISimulationSettingsFactory>().CreateDefault();
project.AddBuildingBlock(simulationSettings);
}
public void should_add_building_block_to_project()
{
A.CallTo(() => _project.AddBuildingBlock(_bb)).MustHaveHappened();
}